SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21723

Length: 897 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene21723 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme 13, E2 n=3 Tax=Embryophyta RepID=D8QMV8_SELML	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	74%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	74%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	74%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
455	85	14			0.993533
456	14		85		0.993533
458		85	14		0.993533
461		85	14		0.993533
481		16	83		0.994512
483		83	16		0.994512
815		20		80	0.995493
832	80	20			0.995493
833	80	20			0.995493
834		20		80	0.995493
835	20	80			0.995493
860	66		33		0.997452
882	66	33			0.997452
883	66	33			0.997452
887	33	66			0.997452
891	33		66		0.997452
894	33	33		33	0.997753
895	33	33			0.997753
896	33	33			0.997753
898	33	33		33	0.997753
899		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain