SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21719

Length: 2281 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21719
CGTCGTGACCTTGGCTGTCACTCAATTCTCGTGTGAGCCACATATTCCAGTTTTGGCATCCTCGTTGTTTTTTCTTTCTGTGTCGGGTGCCAGTTTTGGAAGCTGTGCTCGTATTGCTTCGGAGACTGTGTTTTATGCATTGATTTTGTTTCGAGATTGGTCCTCCTGCGACTTGTTCTCCCGTTGTGGTGCTCTGCAGAATCTGTGGGAAATACCCACATGGTTTTAATGGGCAATGAATGGCAATGAAGAGGGCGTTAGCTGCAGGAATTGATTTTAATTCAGAGAAGCACAATACCTTATTCAGTACACCCTAGGATTTTGAGTATCAGAGCTCATTGAAGTCGATAGATCATTTTTGGGGATCCATGGATAGCATAATAGAAAGGGATTTTATGGGATTGAGTAGACGCAATGGTAATGAAACAGAGGCTGAGAGGATGAGTACCAATGAACAGCCACCTGGTGAAAGAGAGAAAATTGTGAGCCTGAATCTCTTTCAGGAAGCTGATAAAAGTACTGAACCACAACTTTCTTCAGGCAGTTTTTGTGGGTTAAGTGAGGCTATTGCTAAAGCTGGGAATGCAAATGGATCTGTTAAAGTATCCATGCCAAACACAAATATGCAATGGACTTATTGGACCAAAGCTGCTGCGTTGCAGCAGTTCATGTCTTTCAAAAATTATCAGGATGAGAGACCTGAGAAAAGGAAGTTCAACCAACTTGTTGCCTCGGGTATTCAGCCAGTGGCAACTGTTGATACTTTCAAATCAAATCATAGAAGTACATCTGCGTCTCAGAAATCCTACAATTTCAGTCCCATATCGAAGGACAATGCAGAGTTCAGAAACAGTTATTCTGGAGCAAATTGTGTTCCACATCAACATTTTGACGTGCCTCCTTCATCCTTTTCAGTAAAAGCGCTTGATGATCAAAGCTTTACTAATCCTTCTATTGAACAAGCTGGAGCTTTTCTTAGAGAAAAGGCCTCCCACTCTCCAACTAATTTCAGGGAGCATTTCAGCTCTCCTGCTTCTTTTAAGGGACAAGATCCAACAGTGGCTTTGGGTGGAAAACTTATTTCAAGCATTCCCTTTACGAGACAGCCTTCTGTCTTGTGCGGTGCTGCTGCCTCTTCAATTGGTACCACACCGATGAGGGCTGATTCTAATTTACCTGGCAAACTGGCTAATGCTCAGCTGACAATATTCTATGCTGGCACAATAAATGTGTATGATAACATTCCTCCAGACAAGGCACAAGCAATCATGCTAGCAGCTGAAAATGGAAGTTCAATGCCTACAAAGATGACAGATTTATCACCTCAAAATTTTGTAATGTCAACAGCGGTGCCAACAAATAGTCACAGTAGACCAGCCACACCTAATATTTGCTCTAGCCGGCCAAATGCACTGACTTCAATGACTCCACAAGGTCCACCTCAGAAGCCACTTATTCCTATTCCACAAGTTCACTCCCAAAAGACCCAATTATGTTCCAAGCCTGGCCAGTGTATTGGAGTATCCTCAAGTAATGGGGAATTAGAGTCAAATCAAAACAATGGGGTTGGTAGCAACCAACAAGAATGTGCAAAAAAAATTGTCCCAGCATCAACACCTAATGCTGCCGTACCAAGAGCACTACCACTAGCACGTAAAGCATCGTTGGCAAGATTTCTGGAAAAGCGCAATGGAAGGGCTCCTGAAAATTTGTCCTGTCCAACTGAGAAGTCTTCCCATCATTCTTCTCTCCAGCAAGAGAAGTCATTCAGTTCTATGTCATCTTTTGATTCTTCTCTCCAGCAAGAGAAATCATTCAGCTCTATGTCATCTTTTGATGGATGCTCGTCACCACAACATGACCTGACTAGTGATGCACTCCATATGAAAAAGATGAGCAGGTCAGATAGCAAGGAACATTCCAACTACTTGTCATTGCGCCGGGATCGTGCTTGAAGAAGGAAAAATTGCTTTTGGTACAAGGAACTGTTGATCAAACTGTTTCTCATCGCAATTGTTTTTTTCATTATTTTTAACCTTGCAGGTTCTTTCACAGTGCCCCCTGCAACATGAGTTCAGAAGTAACTCAATTAGCGACTATCTTATTTTGAGACACAGTTTTTGTTCCTCTGAAATTGCAATATTGATGTTCAATAAAACAATTATTTGTATGTACAGTAACTTTTCTTTCACTATATATGAATTCAACTCGGAAAGAACTCATTCTTTAGCTGCATTTAATTGAAGCAGCTGGAAATAAATATCAAAGCTATATTAGATTT

Ace file of the UniGene sp_v1.1_unigene21719

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	JAZ3; JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3); K13464 jasmonate-insensitive 3	-	-	6.0e-16	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	zim transcription factor	-	-	0.0	45%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tify	IPR010399	-	0.0	45%
Blast2go	CO/COL/TOC1, conserved site	IPR018467	-	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPL1

Fln msg:

Fln protein: MDSIIERDFMGLSRRNGNETEAERMSTNEQPPGEREKIVSLNLFQEADKSTEPQLSSGSFCGLSEAIAKAGNANGSVKVSMPNTNMQWTYWTKAAALQQFMSFKNYQDERPEKRKFNQLVASGIQPVATVDTFKSNHRSTSASQKSYNFSPISKDNAEFRNSYSGANCVPHQHFDVPPSSFSVKALDDQSFTNPSIEQAGAFLREKASHSPTNFREHFSSPASFKGQDPTVALGGKLISSIPFTRQPSVLCGAAASSIGTTPMRADSNLPGKLANAQLTIFYAGTINVYDNIPPDKAQAIMLAAENGSSMPTKMTDLSPQNFVMSTAVPTNSHSRPATPNICSSRPNALTSMTPQGPPQKPLIPIPQVHSQKTQLCSKPGQCIGVSSSNGELESNQNNGVGSNQQECAKKIVPASTPNAAVPRALPLARKASLARFLEKRNGRAPENLSCPTEKSSHHSSLQQEKSFSSMSSFDSSLQQEKSFSSMSSFDGCSSPQHDLTSDALHMKKMSRSDSKEHSNYLSLRRDRA*

Protein Length: 530

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCGTGTGAGCCACATATTCCAGTTTTGGCATCCTCGTTGTTTTTTCTTTCTGTGTCGGGTGCCAGTTTTGGAAGCTGTGCTCGTATTGCTTCGGAGACTGTGTTTTATGCATTGATTTTGTTTCGAGATTGGTCCTCCTGCGACTTGTTCTCCCGTTGTGGTGCTCTGCAGAATCTGTGGGAAATACCCACATGGTTTTAATGGGCAATGAATGGCAATGAAGAGGGCGTTAGCTGCAGGAATTGATTTTAATTCAGAGAAGCACAATACCTTATTCAGTACACCCTAGGATTTTGAGTATCAGAGCTCATTGAAGTCGATAGATCATTTTTGGGGATCC_-_ATGGATAGCATAATAGAAAGGGATTTTATGGGATTGAGTAGACGCAATGGTAATGAAACAGAGGCTGAGAGGATGAGTACCAATGAACAGCCACCTGGTGAAAGAGAGAAAATTGTGAGCCTGAATCTCTTTCAGGAAGCTGATAAAAGTACTGAACCACAACTTTCTTCAGGCAGTTTTTGTGGGTTAAGTGAGGCTATTGCTAAAGCTGGGAATGCAAATGGATCTGTTAAAGTATCCATGCCAAACACAAATATGCAATGGACTTATTGGACCAAAGCTGCTGCGTTGCAGCAGTTCATGTCTTTCAAAAATTATCAGGATGAGAGACCTGAGAAAAGGAAGTTCAACCAACTTGTTGCCTCGGGTATTCAGCCAGTGGCAACTGTTGATACTTTCAAATCAAATCATAGAAGTACATCTGCGTCTCAGAAATCCTACAATTTCAGTCCCATATCGAAGGACAATGCAGAGTTCAGAAACAGTTATTCTGGAGCAAATTGTGTTCCACATCAACATTTTGACGTGCCTCCTTCATCCTTTTCAGTAAAAGCGCTTGATGATCAAAGCTTTACTAATCCTTCTATTGAACAAGCTGGAGCTTTTCTTAGAGAAAAGGCCTCCCACTCTCCAACTAATTTCAGGGAGCATTTCAGCTCTCCTGCTTCTTTTAAGGGACAAGATCCAACAGTGGCTTTGGGTGGAAAACTTATTTCAAGCATTCCCTTTACGAGACAGCCTTCTGTCTTGTGCGGTGCTGCTGCCTCTTCAATTGGTACCACACCGATGAGGGCTGATTCTAATTTACCTGGCAAACTGGCTAATGCTCAGCTGACAATATTCTATGCTGGCACAATAAATGTGTATGATAACATTCCTCCAGACAAGGCACAAGCAATCATGCTAGCAGCTGAAAATGGAAGTTCAATGCCTACAAAGATGACAGATTTATCACCTCAAAATTTTGTAATGTCAACAGCGGTGCCAACAAATAGTCACAGTAGACCAGCCACACCTAATATTTGCTCTAGCCGGCCAAATGCACTGACTTCAATGACTCCACAAGGTCCACCTCAGAAGCCACTTATTCCTATTCCACAAGTTCACTCCCAAAAGACCCAATTATGTTCCAAGCCTGGCCAGTGTATTGGAGTATCCTCAAGTAATGGGGAATTAGAGTCAAATCAAAACAATGGGGTTGGTAGCAACCAACAAGAATGTGCAAAAAAAATTGTCCCAGCATCAACACCTAATGCTGCCGTACCAAGAGCACTACCACTAGCACGTAAAGCATCGTTGGCAAGATTTCTGGAAAAGCGCAATGGAAGGGCTCCTGAAAATTTGTCCTGTCCAACTGAGAAGTCTTCCCATCATTCTTCTCTCCAGCAAGAGAAGTCATTCAGTTCTATGTCATCTTTTGATTCTTCTCTCCAGCAAGAGAAATCATTCAGCTCTATGTCATCTTTTGATGGATGCTCGTCACCACAACATGACCTGACTAGTGATGCACTCCATATGAAAAAGATGAGCAGGTCAGATAGCAAGGAACATTCCAACTACTTGTCATTGCGCCGGGATCGTGCTTGA___AGAAGGAAAAATTGCTTTTGGTACAAGGAACTGTTGATCAAACTGTTTCTCATCGCAATTGTTTTTTTCATTATTTTTAACCTTGCAGGTTCTTTCACAGTGCCCCCTGCAACATGAGTTCAGAAGTAACTCAATTAGCGACTATCTTATTTTGAGACACAGTTTTTGTTCCTCTGAAATTGCAATATTGATGTTCAATAAAACAATTATTTGTATGTACAGTAACTTTTCTTTCACTATATATGAATTCAACTCGGAAAGAACTCATTCTTTAGCTGCATTTAATTGAAGCAGCTGGAAATAAATATCAAAGCTATATTAGATTT

Fln Alignment:

sp_v1.1_unigene21719___MDSIIERDFMGLSRRNGNETEAERMSTNEQPPGEREKIVSLNLFQEADKSTEPQLSSGSFCGLSEAIAKAGNANGSVKVSMPNTNMQWTYWTKAAALQQFMSFKNYQDERPEKRKFNQLVASGIQPVATVDTFKSNHRSTSASQKSYNFSPISKDNAEFRNSYSGANCVPHQHFDVPPSSFSVKALDDQSFTNPSIEQAGAFLREKASHSPTNFREHFSSPASFKGQDPTVALGGKLISSIPFTRQPSVLCGAAASSIGTTPMRADSNLPGKLANAQLTIFYAGTINVYDNIPPDKAQAIMLAAENGSSMPTKMTDLSPQNFVMSTAVPTNSHSRPATPNICSSRPNALTSMTPQGPPQKPLIPIPQVHSQKTQLCSKPGQCIGVSSSNGELEXXXXXXXXXXXXECAKKIVPASTPNAAVPRALPLARKASLARFLEKRNGRAPENLSCPTEKSSHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQHDLTSDALHMKKMSRSDSKEHSNYLSLRR
B8LPL1_______________MESRMERDFMGLGRRNGNEMESEKTSNNEQPHGEREKIMSLSLFQEAEKSTKLQLSSGSFCGLSEAIGKAGIANGSGKVSVPNTSMQWTYWTKAAALQQFMSFKNYQEERPEKRKFNQLVSSGLQPVATVDTFKSNHRSTSASQKSCNFSPISKDNAEFRNGYSGTNCVPNQHFEVPPANFSVKAFDDQSFCNSSIEQAGAFLREKASHSPPNFREHFSSPASFKGQDSTAALGGKLLSSIPFTRQAPVLCGAAASTVGTTPMRADSNLPGKLASAQLTIFYAGTVNVYDNIPPDKAHAIMLSAENGSSMSTKMTDLSPQNFVMSTPVPTNSHSRPATPTICSSRPNALTSMIPQGPPQKSHMPIPQVHPQKSQICSKPGQSTGVSSSNGELKSNQNNGAGSNQQEGAKQMVSASTPNGVIPRALPQARKASLARFLEKRNGRVTPNLSSPTEKSPHH----------------SSLQQEKSFSSMSSFDGCSSPQHDVTSDALHMKKLSRSDSMAHANHLTLQK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
737		83	16		0.994512
740	83			16	0.994512
741	16	83			0.994512
785	83			16	0.994512
803		16	83		0.999991
927		57		42	1.0
1571		75		25	0.996473
1591		20		80	0.995493
1595		75		25	0.996473
1596	75		25		0.996473
1598	75	25			0.996473
1599	75	25			0.996473
1600	75			25	0.996473
1601	75			25	0.996473
1602	75		25		0.996473
1603	75		25		0.996473
1604		25		75	0.996473
1609	25	75			0.996473
1694	25	75			0.996473
1709	25	75			0.996473
1780	90	10			0.90298
1781	10			90	0.90298
1782		10	90		0.90298
1916	13			86	0.999973
1987			88	11	0.923564
2183			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain