SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21675

Length: 1662 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21675

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxypyruvate reductase	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	hydroxypyruvate reductase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	92%
Blast2go	peroxisome	GO:0005777	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	92%
Blast2go	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	92%
Blast2go	NAD(P)-binding domain	IPR016040	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT9

Fln msg:

Fln protein: MRSSVALSQKIGQVVASMAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAVALTVAAARRVVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLRDADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANRLEPFLDENSTPPAACPSIVNAKVLGLDISKL*

Protein Length: 405

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGCAGGGAAATGGCTCCAAAAATGAGAGGCCCAAGGTCTCAATCTGTTTATCCGCTAACCTGTAGGGTAGGTAGTATAGAATGAGGAGCAGTAGTATAGA_-_ATGAGGAGCAGTGTAGCACTCTCACAGAAAATTGGGCAAGTGGTGGCGTCCATGGCGAAGCCGATTTCGATCGAGGTATGGAATCCTGCAGGGAAACACAGGGTGGTCAGCACCAAATCCATGCCTGGCACCCGTTGGATTCGCCTTCTCACCGATGCAGACTGTCGTCTTGAGATTTGCTCGGAGAAGAAAACTATTTTAGACGTGGAGGACATACAGGCGCTTATTGGTGACAAATGTGACGGAGTAATTGGACAGTTGACAGAGGATTGGGGCGAAACTCTTTTCAGCACCCTCAAACGAGCTGGAGGAACTGCATTTAGTAATATGGCTGTCGGTTACAACAATGTGGATGTGAATGCTGCAAACAAATATGGCATAGCAGTTGGCAACACTCCGGGTGTTCTTACGGAAACAACTGCTGAGTTGGCAGTTGCGTTAACAGTAGCAGCTGCTAGAAGAGTAGTTGAAGCAGATCAGTTTATGAGAGCAGGTCTATATGATGGTTGGCTACCTCACTTATTTGTTGGAAACTTGCTCAAGGGACAAACCGTTGGCATAATTGGCGCTGGAAGGATTGGCTCTGCGTATGCCCGAATGATGGTGGAAGGTTTTAAAATGAATCTCATATACTATGATTTATACCAATCTACTCGACTTGAAAAATATCTGACAGCTTATGGGGAGTTTTTGATGTCTCAAGGTGAAGCGCCAGTTACATGGAAAAGGGCCTCCACTGCTGAGGATGTTCTCAGAGACGCTGACGTGATAAGCCTTCATCCCGTACTAGACAAGACTACTTACCACTTGATTAACAAAGACAGGCTATCGATCATGAAGAAGGAAGCAGTTCTTGTAAATGCAAGCCGAGGCCCAGTGATTGATGAAGCAGCCTTAGTGGACCATTTGAAAGCAAATCCCATGTTTCGTGTAGGATTGGATGTGTTTGAGAATGAGCCATACATGAAGCCTGGTCTTGCAGAGCAGAAGAATGCTGTTGTGGTGCCACACATTGCCTCAGCTTCAAAGTGGACTCGAGAAGGGATGGCCACACTTGCTGCATTAAATGTACTCGGAAAGGTCAAGGGATACCCTGTGTGGCCAGATGCAAACAGATTGGAACCCTTTCTAGATGAGAACTCTACACCTCCAGCTGCCTGTCCAAGCATTGTCAATGCAAAAGTACTAGGTTTAGATATTTCCAAGCTTTAA___GATGGATCCTACGTCTTGGTAAAGATGGTGCGTTTGAACTTGAAGTGCAAGATGACCTGTGTAAAGAAGCTTAACATGGAGTCCGATTGAAAAGGCTCCCAAATGTTGTTAAGAGGCAGGGCCCTTGTACCGTAAAGATACATCTCAAAATATTAATATAAAATTTAGTCGTTTATGCGATTTATGTAATAATTATATCTTTCTGGTGTTTCTTACTGATTTTCCATGAAAAATGTGAGCCATATTTTTACTTCAGCAAAGAGAATCAAATGCATTTCTATATGGTGATGTTATGTATGTCATATATGTGAATCTGAGCTTAT

Fln Alignment:

sp_v1.1_unigene21675___MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICSEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDVNAANKYGIAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYLTAYGEFLMSQGEAPVTWKRASTAEDVLRDADVISLHPVLDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVDHLKANPMFRVGLDVFENEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANRLEPFLDENSTPPAACPSIVNAKVLGLDISKL
A9NKT9_______________MAKPISIEVWNPAGKHRVVSTKSMPGTRWIRLLTDADCRLEICTEKKTILDVEDIQALIGDKCDGVIGQLTEDWGETLFSTLKRAGGTAFSNMAVGYNNVDLNAANTYGIAVGNTPGVLTETTAELAVALTVSASRRVVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKYMTAYGEFLKSQGEAPVTWKRASTAEDVLRDADVISLHPILDKTTYHLINKDRLSIMKKEAVLVNASRGPVIDEAALVNHLKANPMFRVGLDVFEDEPYMKPGLAEQKNAVVVPHIASASKWTREGMATLAALNVLGKVKGYPVWPDANKLEPFLDENSAPPAACPSIVNAKLLGLEVSKL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
26	12		50	12	1.0
27			25	75	1.0
32		87	12		0.992554
84		12	87		0.992554
389		4	2	93	0.976545
434			94	5	0.998744
466		94	5		0.9982
1528	9		90		1.0
1596	14			85	0.993533
1597	14	85			0.993533
1598	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain