SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21673

Length: 2401 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21673
CAGCGGAGGAGAACAGTTCTCTGTTTCCGATCTTCATACTGGCGATTATGGTCTTATCGCTGGTGCCATACACTATCCATCGAGTGGCGAATGCGGCGTGGAAGAAGGCCAGGAGCATTCACTGCCACTGTTCCGTCTGCTTACGCTCTGGAAAATACCGCACATCCGTCGCCAAGAAGATCTCGAAATTTTCAACATGTAGCAACTTGATGCTCCTTCTGCTGTGGGCGATAATGCTTTTTCTGGTATACTATGTCAAGCATATTACTCGCGAGGTTCAACCTTTTGAGCCATTTGCAATTCTTGGACTGGATCCTGCAGCTTCTGAAGCAGAGATCAAGAAGGCTTATCGAAGACTTTCCATCCAATACCATCCAGATAAAAATCCAGATCCAGAGGCCAACAAGTATTTTGTAGAGTATATATCAAAAGCCTATCAGGCTCTTACTGACCCTGCAGCTCGAGAGAATTTTGCAAAGTATGGCCATCCAGATGGTAGACAGGGACTTCAAATGGGTATAGCCCTACCTGAGTTCTTGCTAAATGTACATGGAGCTTCTGGGGGGATTCTCTTGCTTGGGATTGTTGGTGTGTGTATTTTACTGCCCCTTATGACAGCAGTCATATATCTTTCTCGTTCCTCAAAATATACTGGCAATCATGTGATGCATCAGACACTTTCAACCTATTATTACTTCATGAAGCCCTCTCTAGCACCCAGCAAAGTGATGGATGTTTTTATTAAGGCAGCAGAATATGTGGACATGCCTGTTCGTCGTAGTGATGATGAACCTCTCCAGAAGCTCTTTATGGTTGTTCGAAGTGAACTGAATTTTGATCCAAAAAACCTGAAGCAAGAGCAAGCAAAGTTTTGGAAAAAGTATCCAGCTTTGGTCAAAACGGAGTTATTGTTGTTGGCACAGTTGACTCGTGAATCAACATCTGTGCCCTTTGGTCTGCAGTCTGACTTTAGACATGTGTTGCAACTTGCCCCCCGCCTACTTGAAGAACTTATGAAGATGGCAGTTGTAGCACGCAATGATCAGGGACATGGCTGGTTAAGACCTGCCCTTGGTGTAATGGAGCTCTCACAGAGTATTATTCAGGCTGTACCACTCAGTGCCAGGAAAGTTGCAGAACGGAATGCTAATGCCGGGGTCCTCACTGAGGGGATCGCTCCATTTTTGCAGCTACCTCACTTTAGTGAGGCTGTTGTAAAGAAACTTGGTCGCAAAAAGGTGCGCACTTTTCAGGACCTGAGGGAAATGACTCCCAATGACCGTATGGATTTGCTAATTCAATCAGGTTTTTCTGATACAGAGGCCAGGGATGTGGAGGTAGTTCTTGACATGATGCCTTCCATAACAATTGATGTTACATGTGAGACTGAAGGTGAAGAAGGCATTCAAGAAGGTGACATTGTTACATTGCGAGCTTGGATTTCATTGAAACGTGGAAATGGTCTTACTGCTGCTCTGCCTCATGCACCTTACTTCCCATTCCATAAAGAAGAAAATTATTGGTTATTGCTTGCTGATCCTGTCTCTAATAATGTGTGGGTTTCACAAAAGGTCAGTTTTATGGATGAGGCTACTGCAGTTACTGCTGCTTCCAAAGCTATTCAAGAATCTTTGGAAGGTTCTGGTGCAAGTGTTAAGGAGATAAATGTAGCAGTTAAGGAAGCTGTTGAGAAAGTGAAGAGCGGCTCAAGGTTGGTCATGGTTAAATTCCAAGCACCAGCTGAAAGCACGTACAATCTCACAGCTTATTGCTTATCTGATACTTGGATAGGCTGTGACAAGAAGGTGATTGTAAAGTTCAAGGTAGCAAAGCGTAGCAGAGCTGGCACAAGGGCCATGATTGCTGAAGAGGGACCTATTCAAGAAGATGGAATTGAAGAGGAAGAAAATGAAGAAGATGAAGGCACTTATGATGATTATGAAAGTGAATATAGTGATGATGAGGAAGGTGAACCTGAGGAGAGATCTAGGACTGACAAGCATGCAAATGGGAAATCACATGTTGGAAATAGAAGTTCAGGAACTGATAGTGGCTCAGATACAGATGAAGCATAAAGAGATTCCTTTTAAACCAAGCCAGAATAATACTGAGGAGCAGAATCCTTTTTAAATAAGATTTCAGGCCTACAAGTAGTAGATTTAAAAGATAGATATAGTTGTTATGTAGGGGAATTGGGATAACATCCGTGATGTTTTATGTAGTTTTTTCCCTGAGATTTATGTAATATGGAGCAGTCAGACAAAGCTGTAATCAATGCCAACATTTAGCAAACCAATTTTCAAAGTTGACTGTTTCCAGCTTTTAATTCTTAGAAACATTNTGACCCAACTGTGTTTAACTTATTTCTTTGTTTNCCAGGTACTTTATAATACGACCTCAC

Ace file of the UniGene sp_v1.1_unigene21673

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein binding protein, putative; K09540 translocation protein SEC63	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	0.0	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	82%
Blast2go	Heat shock protein DnaJ	IPR003095	-	82%
Blast2go	Sec63 domain	IPR004179	-	82%
Blast2go	Sec63-domain	IPR023290	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A855

Fln msg: your sequence is longer than subject: 676 - 164

Fln protein: MVLSLVPYTIHRVANAAWKKARSIHCHCSVCLRSGKYRTSVAKKISKFSTCSNLMLLLLWAIMLFLVYYVKHITREVQPFEPFAILGLDPAASEAEIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPAARENFAKYGHPDGRQGLQMGIALPEFLLNVHGASGGILLLGIVGVCILLPLMTAVIYLSRSSKYTGNHVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYVDMPVRRSDDEPLQKLFMVVRSELNFDPKNLKQEQAKFWKKYPALVKTELLLLAQLTRESTSVPFGLQSDFRHVLQLAPRLLEELMKMAVVARNDQGHGWLRPALGVMELSQSIIQAVPLSARKVAERNANAGVLTEGIAPFLQLPHFSEAVVKKLGRKKVRTFQDLREMTPNDRMDLLIQSGFSDTEARDVEVVLDMMPSITIDVTCETEGEEGIQEGDIVTLRAWISLKRGNGLTAALPHAPYFPFHKEENYWLLLADPVSNNVWVSQKVSFMDEATAVTAASKAIQESLEGSGASVKEINVAVKEAVEKVKSGSRLVMVKFQAPAESTYNLTAYCLSDTWIGCDKKVIVKFKVAKRSRAGTRAMIAEEGPIQEDGIEEEENEEDEGTYDDYESEYSDDEEGEPEERSRTDKHANGKSHVGNRSSGTDSGSDTDEA*

Protein Length: 677

Fln nts: CAGCGGAGGAGAACAGTTCTCTGTTTCCGATCTTCATACTGGCGATT_-_ATGGTCTTATCGCTGGTGCCATACACTATCCATCGAGTGGCGAATGCGGCGTGGAAGAAGGCCAGGAGCATTCACTGCCACTGTTCCGTCTGCTTACGCTCTGGAAAATACCGCACATCCGTCGCCAAGAAGATCTCGAAATTTTCAACATGTAGCAACTTGATGCTCCTTCTGCTGTGGGCGATAATGCTTTTTCTGGTATACTATGTCAAGCATATTACTCGCGAGGTTCAACCTTTTGAGCCATTTGCAATTCTTGGACTGGATCCTGCAGCTTCTGAAGCAGAGATCAAGAAGGCTTATCGAAGACTTTCCATCCAATACCATCCAGATAAAAATCCAGATCCAGAGGCCAACAAGTATTTTGTAGAGTATATATCAAAAGCCTATCAGGCTCTTACTGACCCTGCAGCTCGAGAGAATTTTGCAAAGTATGGCCATCCAGATGGTAGACAGGGACTTCAAATGGGTATAGCCCTACCTGAGTTCTTGCTAAATGTACATGGAGCTTCTGGGGGGATTCTCTTGCTTGGGATTGTTGGTGTGTGTATTTTACTGCCCCTTATGACAGCAGTCATATATCTTTCTCGTTCCTCAAAATATACTGGCAATCATGTGATGCATCAGACACTTTCAACCTATTATTACTTCATGAAGCCCTCTCTAGCACCCAGCAAAGTGATGGATGTTTTTATTAAGGCAGCAGAATATGTGGACATGCCTGTTCGTCGTAGTGATGATGAACCTCTCCAGAAGCTCTTTATGGTTGTTCGAAGTGAACTGAATTTTGATCCAAAAAACCTGAAGCAAGAGCAAGCAAAGTTTTGGAAAAAGTATCCAGCTTTGGTCAAAACGGAGTTATTGTTGTTGGCACAGTTGACTCGTGAATCAACATCTGTGCCCTTTGGTCTGCAGTCTGACTTTAGACATGTGTTGCAACTTGCCCCCCGCCTACTTGAAGAACTTATGAAGATGGCAGTTGTAGCACGCAATGATCAGGGACATGGCTGGTTAAGACCTGCCCTTGGTGTAATGGAGCTCTCACAGAGTATTATTCAGGCTGTACCACTCAGTGCCAGGAAAGTTGCAGAACGGAATGCTAATGCCGGGGTCCTCACTGAGGGGATCGCTCCATTTTTGCAGCTACCTCACTTTAGTGAGGCTGTTGTAAAGAAACTTGGTCGCAAAAAGGTGCGCACTTTTCAGGACCTGAGGGAAATGACTCCCAATGACCGTATGGATTTGCTAATTCAATCAGGTTTTTCTGATACAGAGGCCAGGGATGTGGAGGTAGTTCTTGACATGATGCCTTCCATAACAATTGATGTTACATGTGAGACTGAAGGTGAAGAAGGCATTCAAGAAGGTGACATTGTTACATTGCGAGCTTGGATTTCATTGAAACGTGGAAATGGTCTTACTGCTGCTCTGCCTCATGCACCTTACTTCCCATTCCATAAAGAAGAAAATTATTGGTTATTGCTTGCTGATCCTGTCTCTAATAATGTGTGGGTTTCACAAAAGGTCAGTTTTATGGATGAGGCTACTGCAGTTACTGCTGCTTCCAAAGCTATTCAAGAATCTTTGGAAGGTTCTGGTGCAAGTGTTAAGGAGATAAATGTAGCAGTTAAGGAAGCTGTTGAGAAAGTGAAGAGCGGCTCAAGGTTGGTCATGGTTAAATTCCAAGCACCAGCTGAAAGCACGTACAATCTCACAGCTTATTGCTTATCTGATACTTGGATAGGCTGTGACAAGAAGGTGATTGTAAAGTTCAAGGTAGCAAAGCGTAGCAGAGCTGGCACAAGGGCCATGATTGCTGAAGAGGGACCTATTCAAGAAGATGGAATTGAAGAGGAAGAAAATGAAGAAGATGAAGGCACTTATGATGATTATGAAAGTGAATATAGTGATGATGAGGAAGGTGAACCTGAGGAGAGATCTAGGACTGACAAGCATGCAAATGGGAAATCACATGTTGGAAATAGAAGTTCAGGAACTGATAGTGGCTCAGATACAGATGAAGCATAA___AGAGATTCCTTTTAAACCAAGCCAGAATAATACTGAGGAGCAGAATCCTTTTTAAATAAGATTTCAGGCCTACAAGTAGTAGATTTAAAAGATAGATATAGTTGTTATGTAGGGGAATTGGGATAACATCCGTGATGTTTTATGTAGTTTTTTCCCTGAGATTTATGTAATATGGAGCAGTCAGACAAAGCTGTAATCAATGCCAACATTTAGCAAACCAATTTTCAAAGTTGACTGTTTCCAGCTTTTAATTCTTAGAAACATTaTGACCCAACTGTGTTTAACTTATTTCTTTGTTTcCCAGGTACTTTATAATACGACCTCAC

Fln Alignment:

sp_v1.1_unigene21673___MDEATAVTAASKAIQESLEGSGASXXXXXXXXXXXXXXXXSGSRLVMVKFQAPAESTYNLTAYCLSDTWIGCDKKVIVKFKVAKRSRAGTRAMIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRTDKHANGKSHVGNR
D5A855_______________MDEATAVTAASKAIQESLEGSGASVKEINVAVKEAVEKVKSGSRLVMVKFQAPAESTYNLTAYCLSDAWIGCDKKVIVKLKVAKRSRAGTRAMIAEEGPVQEDGIEEEENEEDEGTYDDYESEYSDDEEGEPEEKSRTDKHANGKSHVGNR

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
521	88	11			0.923564
523		88		11	0.923564
524		88		11	0.923564
525		88	11		0.923564
531			88	11	0.923564
534		11		88	0.923564
536		88	11		0.923564
538		11		88	0.923564
539	11		88		0.923564
542	88	11			0.923564
543	90	10			0.90298
550	88	11			0.923564
552			88	11	0.923564
561		10	90		0.90298
562			77	22	0.999999
563		22	77		0.999999
564	11		88		0.923564
565			88	11	0.923564
566	11		88		0.923564
567	88		11		0.923564
568		11		88	0.923564
574			11	88	0.923564
579		12	87		0.992554
580	11	11	77		0.968132
581		11	88		0.923564
583	88	11			0.923564
584			11	88	0.923564
588		18		81	0.999994
598	81	18			0.999994
599	18			81	0.999994
600		18		81	0.999994
602		18		81	0.999994
604		81		18	0.999994
606		18	81		0.999994
1983	11		88		0.923564
1990		88		11	0.923564
2057		88		11	0.923564
2179	41		58		1.0
2215	10		90		0.90298
2332		75		25	0.996473
2344		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain