SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21653

Length: 528 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene21653
CGTCGTGACCTTGGCTGTCACTCAATTTTTGATAATAGATATAGCGTCGTGACCTTGGCTGTCACTCAAATGTTTCCTTCTTTTCTGGCGCACCGTTTCTCATTCTCTCCCATGGCTCCTCTCAACCTTCTCCTACTTTTGTTCCTCTTCTCTTGCAACCTCCACTTCACAACAGCCACCAGACCGCAAGTATTCGAGAGCGCTGACTGGATTTCAGAGAAATCCACAGACAAGTGGAAGCTCAAAGAGATCCCGCAAGATCCTCAATCTAGCTGCGAAGCCTGGAGGTTTGGCGTAGAAACAAACACCCTGCGCTATTGGAGCGTTATACCTTCGGAATGCGTGGAATACGTGAAAAACTACATGGTGGGAATCCAGTATCTGTTGGATTCAAACACAGTAGCCAACGAATCCATTGTCTATGCTAACTCTCTCAACATTTCAGGGGATGGGAAGGACGTGTGGGTTTTCGACGTGGATGAGACCCTTCTCTCAAATTTGCCCCTTTACGCAGATTATAATTATGGA

Ace file of the UniGene sp_v1.1_unigene21653

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acid phosphatase 1 precursor, putative (EC:3.1.3.2)	-	-	1.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	acid phosphatase	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Acid phosphatase (Class B)	IPR005519	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRU7

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 153 - 275

Fln protein: MFPSFLAHRFSFSPMAPLNLLLLLFLFSCNLHFTTATRPQVFESADWISEKSTDKWKLKEIPQDPQSSCEAWRFGVETNTLRYWSVIPSECVEYVKNYMVGIQYLLDSNTVANESIVYANSLNISGDGKDVWVFDVDETLLSNLPLYADYNYG

Protein Length: 154

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGATAATAGATATAGCGTCGTGACCTTGGCTGTCACTCAA_-_ATGTTTCCTTCTTTTCTGGCGCACCGTTTCTCATTCTCTCCCATGGCTCCTCTCAACCTTCTCCTACTTTTGTTCCTCTTCTCTTGCAACCTCCACTTCACAACAGCCACCAGACCGCAAGTATTCGAGAGCGCTGACTGGATTTCAGAGAAATCCACAGACAAGTGGAAGCTCAAAGAGATCCCGCAAGATCCTCAATCTAGCTGCGAAGCCTGGAGGTTTGGCGTAGAAACAAACACCCTGCGCTATTGGAGCGTTATACCTTCGGAATGCGTGGAATACGTGAAAAACTACATGGTGGGAATCCAGTATCTGTTGGATTCAAACACAGTAGCCAACGAATCCATTGTCTATGCTAACTCTCTCAACATTTCAGGGGATGGGAAGGACGTGTGGGTTTTCGACGTGGATGAGACCCTTCTCTCAAATTTGCCCCTTTACGCAGATTATAATTATGGA

Fln Alignment:

sp_v1.1_unigene21653___HFTTATRPQVFESADWISEKST--DKWKLKEIPQDPQSSCEAWRFGVETNTLRYWSVIPSECVEYVKNYMVGIQYLLDSNTVANESIVYANSLNISGDGKDVWVFDVDETLLSNLPLYADYNYG
A9NRU7_______________HSTTANRPQVFDHSDWISEESTALDKWELKQPPQDPQLNCESWRFGVETNTVRFWSVVPQECVEYVKDYMDGSQYLLDSNVVANVSIAYANSLNLSGDGKDVWVFDVDETLLSNLPLYAAYNYG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
67		25		75	1.0
69	75	25			1.0
84	3	3	7	85	0.997433
465	16		83		0.994512
510	90			10	0.90298
511	11	88			0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain