SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21651

Length: 1551 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene21651 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Atrophin-1 multi-domain protein	-	-	4.0e-16	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	unknown [Picea sitchensis]	-	-	3.69144e-19	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P215

Fln msg:

Fln protein: MAEFIQRLILAFIVMGFLCHSFKWVSAGGPIQAPQAGFAGSGSPALVPSKSPFSSFLPSPKSAVSVPTAAAPSNSILGSPISAPVHSIPLAAPSKSILGSPISAPSHASPVAAPSAATATTPISKPPVYVSQPSTSPVSTSPASTPPASTPVKLLSPSSSPMAPSLSPTLAVPVSATPSSPTYVPSSSPISTVSPTMEPVSSPVSVPVISPVSVPVISPISVPVISPISVPVTSPSPSPAQISPLLAPVGSPLSPVPTVSPQISPSTTPVGSPVETPTEDSYAEVPSPSPSVPQDDGDTSAATFTRSVATGFGAAISCALQVYVLAFL*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCACGAGAGTCATGTCCCTTCTGAATCGAGAGGACACGCAATTACTATTACAGTCGAAAGCGTTTCAGGTTCTTCGTACGCGGTACAGCGCGTGTTGACCTTGGTTGTTGCTCATTCCCTTGGACCTTTCAACAACGACATTCTTCAATATGCTTTAATATCACATCCACCCTTTCTCAGCTACTCCAATTATTAATTAAATCAGTCAGTCCAAATGAATCGGACCCCCAGCCGAGCCGAGCCGGCCAATCTGTAAACTCCCCCGTGAATAAAAATCTCAGCTGTGGCAGCGGCGCTAGAGTCGCTCTAAGATCC_-_ATGGCCGAGTTTATCCAGAGGTTGATTCTGGCGTTCATTGTCATGGGATTTCTGTGTCACAGCTTCAAATGGGTATCAGCAGGTGGCCCCATTCAGGCCCCTCAGGCTGGATTCGCAGGTTCAGGTTCTCCTGCATTGGTGCCATCGAAATCGCCATTTTCTTCTTTCTTGCCATCTCCCAAGAGCGCTGTTTCGGTACCCACTGCTGCTGCTCCCTCTAACTCCATTCTCGGATCCCCAATTTCTGCCCCTGTCCATTCAATCCCCCTTGCTGCTCCTTCCAAGTCCATTCTTGGATCCCCCATTTCTGCACCCTCTCATGCATCGCCCGTGGCTGCTCCCTCGGCTGCAACTGCAACTACACCAATTTCGAAGCCTCCTGTCTATGTTTCTCAGCCCTCAACATCCCCTGTTTCAACATCCCCTGCTTCAACACCCCCTGCTTCCACCCCAGTCAAGCTGCTATCTCCTTCATCGTCTCCCATGGCTCCTTCCCTTTCGCCAACTCTAGCCGTACCTGTGTCAGCCACGCCCTCAAGTCCAACCTACGTCCCGAGTTCCTCTCCCATTTCCACTGTTTCTCCGACCATGGAACCAGTATCTTCTCCCGTTTCTGTACCTGTAATATCTCCCGTTTCTGTACCTGTAATATCTCCCATTTCTGTACCTGTAATTTCTCCCATTTCTGTACCTGTAACTTCGCCTTCCCCTTCCCCTGCACAGATCTCACCATTGTTAGCACCAGTGGGATCACCATTAAGCCCTGTTCCTACAGTCTCGCCTCAGATCTCTCCCTCTACTACGCCTGTGGGTTCTCCAGTGGAAACTCCAACCGAAGATTCATACGCTGAAGTTCCATCTCCCTCTCCATCTGTACCTCAAGACGACGGTGATACCTCGGCAGCTACATTCACCAGATCAGTGGCAACAGGCTTCGGCGCTGCGATTTCCTGTGCTTTACAGGTTTATGTTCTCGCGTTTCTGTAA___TGTCAAGGTGAACCATTAGCGAAAAACAGTGGATGTCGTGGAAGTGTTGTGGATCACGCGCAGGCTTTCGAGTTCGTACTGGTAGTGATTCAATGGATGTCCGTAAGTCAATAAAGAGATCGTTTACTCCATCTCTCTGTTATATTTGATCTTGTATTCTTCGACGATTGGTCTTATAAATATTAAACACCATTGTATGGTTGAATAACTTATTCTGAATTTAT

Fln Alignment:

sp_v1.1_unigene21651___MAEFIQRLILAFIVMGFLCHSFKWVSAGGPIQAPQAGFAGSGSPALVXXXXXXXXXXXXXXXXXXXXXXXXXSNSILGSPISAPVHSIPLAAPSKSIL
A9P215_______________MAEFIERFILTLIVMGFLRHNFKWALAGGPIQAPKSGYAGSPS---FLPSKSPLHSYLPSPRSAVSTPSAAPSKSILGSPISAPIHASPIAAPSKSIL

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
975	18		81		1.0
979			5	76	1.0
981	16	83			1.0
983	82	17			1.0
984		17	82		1.0
993		16	16	66	1.0
995		11	82		0.999919
997		16	83		1.0
998		16	77	5	1.0
999		20	73		1.0
1001	20		80		1.0
1002		75	18	6	1.0
1003	75		25		1.0
1004	6		75	18	1.0
1007		18	81		1.0
1008		81	18		1.0
1060		86		13	0.999973
1063		13	6	80	0.999961
1064	6		13	80	0.999961
1293	20		20	60	0.99255
1296		25	75		0.996473
1297		75	25		0.996473
1314		25		75	0.996473
1315		25		75	0.996473
1353	83			16	1.0
1354	83		16		1.0
1356		20	80		1.0
1357	20		80		1.0
1359		20		80	1.0
1360		20	80		1.0
1361	20		80		1.0
1363			20	80	1.0
1366		20	80		1.0
1369			20	80	1.0
1371		20		80	1.0
1372			20	80	1.0
1402	75			25	1.0
1406		75	25		1.0
1407	25	75			1.0
1408	75	25			1.0
1411		25	75		1.0
1412		25	75		1.0
1417	75		25		1.0
1418		8	16	50	1.0
1419		50	25	16	1.0
1420	75		16		0.99999
1421	25	16	33		1.0
1422		75		25	1.0
1423	16	25	50		1.0
1424	75		16		0.99999
1426	25		8	16	1.0
1427		25	75		1.0
1429	25	12			1.0
1430			25	12	1.0
1432			12	25	1.0
1433		66	22	11	0.999999
1434	22	77			0.999999
1435	44	55			1.0
1436	33	33	33		1.0
1437	22		66		0.999999
1438	22	55	22		0.999999
1439			55	33	1.0
1441	42		57		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1283	1297	CGGCT CGGCT CGGCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain