SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21644

Length: 848 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21644

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZC4_RICCO	-	-	2.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	lipid binding	-	-	1.86621e-38	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	1.86621e-38	70%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.86621e-38	70%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	1.86621e-38	70%

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
111		9		90	0.999842
113	86	9			0.999642
145	95		4		0.996599
210			4	95	0.995482
211	4			95	0.995482
214			95	4	0.995482
221			95	4	0.995482
222	95	4			0.995482
223	4		95		0.995482
259		90	1		1.0
262	90	7	1		1.0
264		1	92		0.999988
266	5	94			0.999997
294		6		93	1.0
297	91	1			1.0
299	89	1	6	1	1.0
300		1	89	8	1.0
302	6	91	1		1.0
303		6	1	89	1.0
305	91			6	1.0
309	91		6		1.0
311	93			6	1.0
316	11	1	87		1.0
350	94	1	3		0.936582
473	93	6			0.999153
479	91	8			1.0
480		8	91		1.0
483			5	94	0.998744
485	94			5	0.998744
486	91	2	5		0.995208
489		5		94	0.998744
490			94	5	0.998744
492	5	94			0.998744
637	37		62		1.0
646	92		4		0.98868
648	95	4			0.997494
650		95	5		0.997749
651			5	95	0.997749
667			41	58	1.0
669	41			58	1.0
729	9	90			0.999872
797	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain