SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21643

Length: 972 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21643

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to Os11g0657300; K11098 small nuclear ribonucleoprotein F	-	-	4.0e-35	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	small nuclear ribonucleoprotein f	-	-	1.51527e-36	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	1.51527e-36	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	1.51527e-36	95%
Blast2go	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	1.51527e-36	95%
Blast2go	Like-Sm ribonucleoprotein (LSM)-related domain	IPR010920	-	1.51527e-36	95%
Blast2go	Small nuclear ribonucleoprotein SmF	IPR016487	-	1.51527e-36	95%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
461			2	93	0.979066
466	88	9			1.0
467	88	1	9		1.0
472	88	9	1		1.0
475			90	10	1.0
478	90	10			1.0
479	84	3		12	1.0
483	87	7		4	1.0
484	12	1	85		1.0
897		12		87	0.992554
911	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain