SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21636

Length: 2779 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21636
CGTCGTGACCTTGGCTGTCACTCAATATTATTTAATCGTCGTGACCTTGGCTGTCACTCAGGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGAGGAGAAAACCCTGAATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAAATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCCCAAATAAGATTGTCGACGTCTCTGAAAACCTTGGAGAAGTTCTCCGGGGTGATCGCATTGAAAACTCACCTTATGTGTTCGAAATGAGAGAAAGTAGACTTTGCAATGTTGTTTGCAAGATTAAGCTGGATGCAAAGACTGCAAAGAACTTCAAGGAGAAGATTGATGATGAATATCATGTTAATATGATTCTGGATAATCTACCTGTGGCAGTGGCCAGACAGAGGTCTGATGGAAATAGCCTTACTACATATGAGCATGGCTTCCGAGTTGGGTTCAAAGCAAGCTACGCAGGGAGTTCAGAAGAGAGGCACTTCATCCACAATCATTTGGCTTTTATTGTGATGTATCACAAGGATGTTGAAACTGATTCTGCACGCATAGTTGGATTTGAAGTTGCACCATTCAGTGTAAAGCATGAGTATGAACAACCATGGGATAATGTCAAAACCCGTTTGACAACTTGTGATCCAAATACCAAGCATACAGTGTCAAATTCTGAGATTCCCCAAGAAGTTGTAGAAGACAAAGAAGTTATATTCACTTATGATGTTACTTTCCGGGAGAGCCCTGTGAAATGGGCATCACGTTGGGATACTTACCTTCTTATGACAGATGATCAGATCCATTGGTTCTCTATCATCAACTCATTGATGATTGTTTTATTTCTTTCCGGAATGGTTGCAATGATCATGATGCGAACATTGTACCGGGATATCTCAAAATACAACCAATTAGAAACACAGGATGAGGCTCAAGAAGAAACTGGATGGAAATTGGTCCATGGAGATGTGTTCAGGGCCCCAACCAATGCAAGCTTACTTTGTGTCTATGTGGGAACTGGAGTTCAGTTTTTTGCCATGACACTAGTGACAATGATATTTGCAGTCCTTGGTTTCCTTTCTCCTTCGAACCGTGGAGGTTTAATGACAGCCATGCTGCTATTATGGGTGTTTATGGGTTTGTTTGCTGGGTATGCATCGTCACGTCTATATAAGATGTTCAAGGGCACAGAATGGAGGAAGAACACGCTGAAGACAGCATTCTTGTTTCCAGGCATTGCCTTTTGCATTTTCTTTATTCTCAATGCACTGATATGGGGAGAAAAATCATCTGGTGCAGTTCCTTTTGGGACTATGTTTGCCTTGGTCCTTTTATGGTTTGGAATTTCTGTGCCATTGGTCTTTGTGGGCAGTTACTTTGGCTACAAGAAACCTGCAATTGAGGATCCAGTGAAGACCAATAAAATCCCCAGGCAGATTCCAGAGCAAGCTTGGTATATGCAGCCCATTTTCTCAATACTAATTGGAGGCATTTTGCCTTTTGGAGCTGTATTCATTGAACTGTTCTTCATATTAACTTCAATATGGCTGCATCAGTTCTACTATATATTTGGGTTCCTGTTCATTGTCTTTGTGATCCTCATTGTGACATGTGCAGAGATCACCATTGTCCTGTGCTACTTTCAATTGTGCAGTGAAGATTACAACTGGTGGTGGAGATCTTATTTGACTGCAGGCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCACCAAGCTGGAGATGACAAAGCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGAGGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAAGTTTTGGTTTAGGGGAATGGTGCTTGCTCCTTTTATGTTGTTTTAGAGGTTTTTGGGTAACATTACAGGAGACACCAACGTCAATGTGCTGCTGTGGGAGTTAACACTGAATACGTATGTTCATAGATTAATCTCCCGCTACATTCTCTTGTTGAAATATAAACTCAATTCCCATTGTAATCAATTCAATGCTATATTTTATGCAGTTGAGGCCAAAACCACTTGATATTTATTGGTTTTCATGTTCCTTCAACCATGGGATAGGGTATCATACAACATTCCTAGCATCATTCTGATGAAGGATAGGATTCTTTTTATCTAAACAGAGTTTATTTTCCAGTTTCGTGAATGCTAATACGTTTTTCAATGAACAGTTGGTGTTCTTGCGAAGGTTTTGTACAATAAACAGTTGGCATTGTTCTCATTGCCGTGGCTGGCATTCACAATTTATTCTTTGGGCTGCATCTTAAAACTACTAGTCTTTCTTTTATGTATACATATTTTA

Ace file of the UniGene sp_v1.1_unigene21636

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9STR3_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	endosomal p24a protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nonaspanin (TM9SF)	IPR004240	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: your sequence is longer than subject: 641 - 370

Fln protein: MALTAHMKVLVWASALLLLFFGANCFYLPGVAPHDFNKGDELQVKVNKLTSIKTQLPYEYYSLHYCPPNKIVDVSENLGEVLRGDRIENSPYVFEMRESRLCNVVCKIKLDAKTAKNFKEKIDDEYHVNMILDNLPVAVARQRSDGNSLTTYEHGFRVGFKASYAGSSEERHFIHNHLAFIVMYHKDVETDSARIVGFEVAPFSVKHEYEQPWDNVKTRLTTCDPNTKHTVSNSEIPQEVVEDKEVIFTYDVTFRESPVKWASRWDTYLLMTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSAFYLFLYATFYFFTKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID*

Protein Length: 642

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTATTTAATCGTCGTGACCTTGGCTGTCACTCAGGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGAGGAGAAAACCCTGAATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAA_-_ATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCCCAAATAAGATTGTCGACGTCTCTGAAAACCTTGGAGAAGTTCTCCGGGGTGATCGCATTGAAAACTCACCTTATGTGTTCGAAATGAGAGAAAGTAGACTTTGCAATGTTGTTTGCAAGATTAAGCTGGATGCAAAGACTGCAAAGAACTTCAAGGAGAAGATTGATGATGAATATCATGTTAATATGATTCTGGATAATCTACCTGTGGCAGTGGCCAGACAGAGGTCTGATGGAAATAGCCTTACTACATATGAGCATGGCTTCCGAGTTGGGTTCAAAGCAAGCTACGCAGGGAGTTCAGAAGAGAGGCACTTCATCCACAATCATTTGGCTTTTATTGTGATGTATCACAAGGATGTTGAAACTGATTCTGCACGCATAGTTGGATTTGAAGTTGCACCATTCAGTGTAAAGCATGAGTATGAACAACCATGGGATAATGTCAAAACCCGTTTGACAACTTGTGATCCAAATACCAAGCATACAGTGTCAAATTCTGAGATTCCCCAAGAAGTTGTAGAAGACAAAGAAGTTATATTCACTTATGATGTTACTTTCCGGGAGAGCCCTGTGAAATGGGCATCACGTTGGGATACTTACCTTCTTATGACAGATGATCAGATCCATTGGTTCTCTATCATCAACTCATTGATGATTGTTTTATTTCTTTCCGGAATGGTTGCAATGATCATGATGCGAACATTGTACCGGGATATCTCAAAATACAACCAATTAGAAACACAGGATGAGGCTCAAGAAGAAACTGGATGGAAATTGGTCCATGGAGATGTGTTCAGGGCCCCAACCAATGCAAGCTTACTTTGTGTCTATGTGGGAACTGGAGTTCAGTTTTTTGCCATGACACTAGTGACAATGATATTTGCAGTCCTTGGTTTCCTTTCTCCTTCGAACCGTGGAGGTTTAATGACAGCCATGCTGCTATTATGGGTGTTTATGGGTTTGTTTGCTGGGTATGCATCGTCACGTCTATATAAGATGTTCAAGGGCACAGAATGGAGGAAGAACACGCTGAAGACAGCATTCTTGTTTCCAGGCATTGCCTTTTGCATTTTCTTTATTCTCAATGCACTGATATGGGGAGAAAAATCATCTGGTGCAGTTCCTTTTGGGACTATGTTTGCCTTGGTCCTTTTATGGTTTGGAATTTCTGTGCCATTGGTCTTTGTGGGCAGTTACTTTGGCTACAAGAAACCTGCAATTGAGGATCCAGTGAAGACCAATAAAATCCCCAGGCAGATTCCAGAGCAAGCTTGGTATATGCAGCCCATTTTCTCAATACTAATTGGAGGCATTTTGCCTTTTGGAGCTGTATTCATTGAACTGTTCTTCATATTAACTTCAATATGGCTGCATCAGTTCTACTATATATTTGGGTTCCTGTTCATTGTCTTTGTGATCCTCATTGTGACATGTGCAGAGATCACCATTGTCCTGTGCTACTTTCAATTGTGCAGTGAAGATTACAACTGGTGGTGGAGATCTTATTTGACTGCAGGCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCACCAAGCTGGAGATGACAAAGCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGA___GGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAAGTTTTGGTTTAGGGGAATGGTGCTTGCTCCTTTTATGTTGTTTTAGAGGTTTTTGGGTAACATTACAGGAGACACCAACGTCAATGTGCTGCTGTGGGAGTTAACACTGAATACGTATGTTCATAGATTAATCTCCCGCTACATTCTCTTGTTGAAATATAAACTCAATTCCCATTGTAATCAATTCAATGCTATATTTTATGCAGTTGAGGCCAAAACCACTTGATATTTATTGGTTTTCATGTTCCTTCAACCATGGGATAGGGTATCATACAACATTCCTAGCATCATTCTGATGAAGGATAGGATTCTTTTTATCTAAACAGAGTTTATTTTCCAGTTTCGTGAATGCTAATACGTTTTTCAATGAACAGTTGGTGTTCTTGCGAAGGTTTTGTACAATAAACAGTTGGCATTGTTCTCATTGCCGTGGCTGGCATTCACAATTTATTCTTTGGGCTGCATCTTAAAACTACTAGTCTTTCTTTTATGTATACATATTTTA

Fln Alignment:

sp_v1.1_unigene21636___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSXXXXXXXXXXXXXXKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID
D5AC25_______________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
508	16	83			0.999991
721	80		20		1.0
1213	66		33		1.0
1786	90			10	0.90298
2107		22		77	0.999999
2189		12		87	0.992554
2214	10	90			0.90298
2216		90	10		0.90298
2217	90		10		0.90298
2218			10	90	0.90298
2241			13	86	0.999973
2242			86	13	0.999973
2244	86		13		0.999973
2248	86			13	0.999973
2253		80		13	0.999961
2254		13		86	0.999973
2255	88	11			0.999952
2256		11	11	76	0.999894
2257	11			88	0.999952
2258		11		88	0.999952
2259			11	88	0.999952
2261		88	11		0.999952
2263		11	88		0.999952
2264	88	11			0.999952
2265			87	12	0.999964
2266			87	12	0.999964
2270		87		12	0.999964
2273		12		87	0.999964
2275	87	12			0.999964
2452		3		96	0.987242
2455	96		3		0.988113
2460	94	3	1		0.930835
2463		96	3		0.988939
2464	96		3		0.988939
2465	96	3			0.988939
2468		96		3	0.989722
2469		3		96	0.989722
2473			12	87	1.0
2578	17		82		1.0
2719	58		41		1.0
2771		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain