SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21634

Length: 1239 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene21634 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	rd20 protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	74%
Blast2go	alpha-Linolenic acid metabolism	00592	74%
Blast2go	Biosynthesis of plant hormones	01070	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin metabolic process	GO:0031407	Biological Process	74%
Blast2go	response to fungus	GO:0009620	Biological Process	74%
Blast2go	response to salt stress	GO:0009651	Biological Process	74%
Blast2go	response to desiccation	GO:0009269	Biological Process	74%
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	74%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	74%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	74%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	74%
Blast2go	microsome	GO:0005792	Cellular Component	74%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Caleosin	IPR007736	-	0.0	74%
Blast2go	EF-hand-like domain	IPR011992	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P193

Fln msg:

Fln protein: MASPSEDSMQTVAGRAPITAQRRLNTHLQEQMPKPYLARALESVDPEHINGSTDHNNNGMSVLQQHVAFFDKDNDGIIYPCDTYTGFRAIGFNVPISLFFAVVVNVAFGYYTLPGWIPSLKFPIYVENIHRAKHGSDTESYDTEGRFDPAKFDAIFSKYAIKHQDKLTFREIQCMLKGNRNSNDPIGWLIAELEWLPLYFIAKNKHGLLEKETIRRLFDGSLFETLAKQNSCRKRR*

Protein Length: 238

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCACATCTTTTGTTCCATCGCACTTTTTAATTTGTTATTTTAAGGCAAGCTTGCTACTATTCTTAACATTGTCTTCTTTTGGATCTCACATAAAGCCCCTCAACGAACTGAAAG_-_ATGGCGAGCCCTTCAGAAGACTCCATGCAAACAGTTGCTGGACGGGCACCGATTACTGCACAGCGCAGATTGAACACCCACCTGCAAGAGCAAATGCCAAAGCCATATTTAGCAAGAGCTCTGGAATCAGTGGATCCAGAGCACATAAATGGGTCTACTGATCATAATAACAACGGCATGAGCGTTCTTCAACAACATGTGGCGTTTTTCGATAAAGACAATGACGGAATTATTTATCCTTGTGATACATACACAGGCTTTCGTGCCATAGGATTTAATGTACCCATTTCGCTTTTCTTTGCGGTTGTTGTCAACGTAGCCTTCGGCTACTATACTCTTCCTGGATGGATACCATCACTGAAATTTCCTATATACGTTGAAAACATCCACAGAGCAAAGCATGGAAGCGACACAGAGAGCTATGACACTGAAGGGAGGTTCGATCCTGCCAAGTTTGATGCCATCTTCAGCAAATACGCTATAAAACATCAAGACAAACTCACCTTCCGGGAGATCCAGTGCATGCTTAAAGGAAATAGGAATTCAAATGACCCTATTGGATGGTTGATAGCTGAGCTGGAATGGCTCCCCCTGTATTTCATCGCCAAGAACAAGCATGGTCTTTTGGAGAAAGAAACCATAAGAAGGTTGTTCGACGGCAGCCTGTTTGAAACATTGGCAAAACAAAATTCATGTCGCAAAAGGCGCTAA___ACGTCTAATAGCAAAGTAATATAATGTAGGAACAAGACAATAAAGGCAGGTTGTTTGCACAGGACGAAGGGACAACGAAATGCCTCTAGGAGTTGATAAGTAAAACGAGGACAAGAAATAAAATAGTAATTACTGGTTTGGCTCGAAAGATAGCAATGTTCCAAACTTCTTGGAAATTGGTAATTGTTGACAACGAAACAGACATGTTGCAAGTGTGGTTGCAAGATATTGGTATAAGTTATAGAAATAAACGTGTGTGCTTGTCGAATTACTTGGATGGATTGGCATATTTGTTTACGTATCTACATCTAGATGTCGAACACTTTGGATCAATGTTTTCCTCGTAACATCTATATTCTATTTATGATAAAATAGAATAAAAGTCTGAG

Fln Alignment:

sp_v1.1_unigene21634___MASPSEDSMQTVAGRAPITAQRRLNTHLQEQMPKPYLARALESVDPEHINGSTDHNNNGMSVLQQHVAFFDKDNDGIIYPCDTYTGFRAIGFNVPISLFFAVVVNVAFGYYTLPGWIPSLKFPIYVENIHRAKHGSDTESYDTEGRFDPAKFDAIFSKYAIKHQDKLTFREIQCMLKGNRNSNDPIGWLIAELEWLPLYFIAKNKHGLLEKETIRRLFDGSLFETLAKQNSCRK
A9P193_______________MASPSEDSLQTVAARAPITAQRRLNIHLQEQMPKPYLARALEAVDPEHINGSTDYNNNDMSVLQQHVAFFDKDKDGIIYPCDTYKGFRAIGFNVLFSLFVAVIINVAFSYYTLPGWIPSLKFPVYVDNIHRAKHGSDTEVYDTEGRFDPDKFDAIFSKYAIKHKDKLTFWEIQCMLKGNRNSNDPLGWAAAELEWVALYLIAKNKNGLVEKETIRRMFDGSLFEALAKPQSSRK

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
658	90		10		0.90298
664	10	90			0.90298
669	11	88			0.923564
749			50	50	1.0
823	33		66		0.997452
925	16		83		0.994512
926		50		50	1.0
943	50	50			1.0
946	50		50		1.0
957	33			33	1.0
976	53	46			1.0
982	46		53		1.0
1001		46	53		1.0
1002		53		46	1.0
1013		30		60	1.0
1026	70		30		1.0
1033	90		10		0.90298
1037			30	70	1.0
1049	87		12		0.992554
1052		87	12		0.992554
1062		87	12		0.992554
1063		87	12		0.992554
1064	12		87		0.992554
1097		71	28		1.0
1120	28		71		1.0
1153	87		12		0.992554
1156	87		12		0.992554
1158		12		87	0.992554
1163		12	87		0.992554
1168		87	12		0.992554
1170		12		87	0.992554
1171	12		87		0.992554
1173		87	12		0.992554
1174	12			87	0.992554
1175		12		87	0.992554
1176	87		12		0.992554
1198	14	85			0.993533
1205	71		28		1.0
1208	83		16		0.994512
1209	85	14			0.993533
1210	83	16			0.994512
1211	16		83		0.994512
1212	66			33	1.0
1213			16	83	0.994512
1218	20	80			0.995493
1219		40		60	1.0
1220		33	66		1.0
1221	83	16			0.994512
1222	20		60		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain