SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21604

Length: 1787 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21604

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase_M24 domain containing protein	-	-	1.0e-27	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	proliferation-associated protein 2g4	-	-	0.0	93%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase M24, structural domain	IPR000994	-	93%
Blast2go	Peptidase M24, methionine aminopeptidase	IPR001714	-	93%
Blast2go	Proliferation-associated protein 1	IPR004545	-	93%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUM6

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 366 - 394

Fln protein: MSDDEAKEEKELDLTSHDVVTKYKLSAEIANKALQIVLSECKPKAKVVDLCEKGDSYIREQTGNVYKNAKKKIEKGVAFPTCISINSTVCHFSPLTGDETVLEENDIVKIDLGCHIDGFISVIAHTHVVQEGPVAGRAADVIAAANTAAEVALRLVKPGKKNKDVTEAIQKVAAAYDCKIAEGVLSHQMKQFVIDGNKVVLGASNPETRVDDAEFEENEVYAIDIVTTTGEGKLKLLDEKETTIYKRAVDKNYQLKMKASRLIFTEINQKFPIMPFTARALEDKRARLGLVECVNHELLQPYPVLHEKPGELVAHIKFTVLLMPNGSDKITGHPLQELNPTKTIDDPEIKAWLALGTKSKKKGGGK

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGTTGCATTATAACTTAAAATGAAAGAAAAATATGATTGGGTAGAAGTTGGTAAATTTAGTGCTTTGTTATCGTCTAAACTTAGGGCAAAACAAATTTTGATCAAGTGTGGAAAGGTTTTAAGTTTTATCTCATTTATTTTTGGATAATATTTATATACCTAGATTCTGAAATTCCAATATTTTCCTTTTTATGAATATTACTATCATTAGTTTTGTTTGATGTAAATGAAAGGGATGATGATGAGATATTTTATCAGGAGGGCAAAAGCCATTAGATTTCATATTCCAGAAGTGACAAGGCTGCTTGGAATATGATTCCCCAAACTTCAGAAAGTGCCCAGGCAAATCTAAGCCAAAAGCCCCCAAAAGCCGCTAGATCAAAGGGCAAACCAAAAACCCCTAACTCGGAATAAAACCCCGAAAACACCCTAACAATCACCAATAAGCTTAGACATCTGCTTTTATCACCACAATCTTGTCGCCGCCAACCTGTTGAGAGTCCGTCATTCGTTTGCGCTCCGCGCTTTGATTCCTTTACAACTCCATTTGATTGTTTAGCATTCCTTTCATTTTTAGGCTCAGAATCTGCCATTGCTGGGAAACCCTAGTCGAGACGATTTTCAACAGTATAGACTACTTGATATCAGTTTTGTTAACAGAAA_-_ATGTCAGACGACGAAGCCAAAGAGGAGAAGGAGTTGGATCTCACCTCGCATGATGTAGTTACCAAGTATAAGCTTTCTGCTGAAATTGCGAATAAAGCTTTACAAATAGTTTTGTCTGAGTGCAAGCCAAAGGCAAAGGTGGTTGATCTGTGTGAAAAGGGGGACTCATATATTAGAGAACAAACAGGAAATGTATATAAGAATGCCAAGAAGAAGATAGAGAAAGGTGTTGCATTTCCTACTTGTATCTCAATCAATAGCACGGTATGCCATTTCTCTCCTCTGACTGGAGATGAAACTGTCTTGGAGGAAAATGACATTGTGAAAATTGATCTGGGATGCCATATTGATGGCTTCATTTCAGTGATAGCCCACACTCATGTGGTACAAGAAGGACCTGTTGCTGGAAGGGCGGCGGATGTTATTGCAGCTGCTAACACTGCAGCAGAAGTTGCTTTGAGACTTGTCAAGCCAGGGAAGAAGAATAAGGATGTGACTGAAGCCATCCAAAAAGTCGCTGCAGCGTATGACTGCAAAATTGCAGAGGGAGTACTAAGTCATCAGATGAAGCAATTTGTTATTGATGGCAATAAAGTTGTACTCGGTGCAAGCAATCCAGAAACAAGGGTTGATGATGCTGAGTTTGAGGAAAATGAAGTTTATGCTATTGACATTGTAACAACTACAGGTGAAGGAAAGCTTAAACTGCTTGATGAAAAGGAAACAACTATATACAAGAGGGCTGTTGATAAAAACTATCAGTTGAAGATGAAAGCATCAAGGCTTATCTTCACTGAAATAAACCAGAAGTTTCCTATTATGCCATTTACTGCAAGGGCTCTGGAAGACAAGCGTGCCCGTTTAGGTCTGGTGGAATGTGTCAACCACGAGCTTTTGCAGCCTTACCCTGTTCTTCACGAGAAACCAGGTGAGCTGGTTGCCCATATAAAATTCACGGTCTTGTTGATGCCAAATGGATCAGACAAAATCACAGGGCATCCATTGCAAGAATTGAATCCAACCAAGACTATTGATGATCCTGAGATAAAAGCATGGCTAGCTTTGGGGACCAAGTCCAAAAAGAAAGGGGGTGGAAAG

Fln Alignment:

sp_v1.1_unigene21604___TSHDVVTKYKLSAEIANKALQIVLSECKPKAKVVDLCEKGDSYIREQTGNVYKNAKKKIEKGVAFPTCISINSTVCHFSPLTGDETVLEENDIVKIDLGCHIDGFISVIAHTHVVQEGPVXXXXXXXXXXXXXXXXXXLRLVKPGKKNKDVTEAIQKVAAAYDCKIAEGVLSHQMKQFVIDGNKVVLGASNPETRVDDAEFEENEVYAIDIVTTTGEGKLKLLDEKETTIYKRAVDKNYQLKMKASRLIFTEINQKFPIMPFTARALEDKRARLGLVECVNHELLQPYPVLHEKPGELVAHIKFTVLLMPNGSDKITGHPLQELNPTKTIDDPEIKAWLAL
A9NUM6_______________TSHDVVTKYKLSAEIANKALQIVLSECKPKAKVVDLCEKGDSYIREQTGNVYKNAKKKIEKGVAFPTCISVNSTVCHFSPLAGDETVLEENDLVKIDLGCHIDGFISVVAHTHVVQEGPVSGRVADVIAAANTAAEVALRLVKPGKKNKDVTEAIQKVAAAYDCKIAEGVLSHQMKQFVIDGNKVVLGASNPETRVDDAEFEENEVYAIDIVTSTGEGKLKLLDEKETTIYKRAVDKNYQLKMKASRLIFTEINQKFPIMPFTARALEDKRARLGLVECVNHELLQPYPVLHEKPGELVAHIKFTVLLMPNGSDKITGHPLQELNPTKAIDDPEIKTWLAL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
327			90	10	0.90298
329		88	11		0.923564
330			11	88	0.923564
334			10	90	0.90298
340	90	10			0.90298
349	10	90			0.90298
476			75	25	0.996473
477		75	25		0.996473
478			25	75	0.996473
479			25	75	0.996473
624	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain