SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21600

Length: 433 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene21600
CGTCGTGACCTTGGCTGTCACTCAAATTATCTGAATGCCACTAAACCCCCCAGTTCGTGCTGCTCTCCGTTGATGACAGAGTACAATGCTAATAAGCCATGCCTGTGTGACCTGTTGAACAGTAGTGAACTCATTCAGCAATTCAATGTCAACATCACTGAGGCATTAGAACTCCCTACCAAATGCGGCCTCAGTGATCCTTCCAGCGGTTGCTCTAAACTTCGTGAAAACAGCACCTCTTCAGGATCTACTCCACTTCCTGACGCTAACACCACTTCTTCCAGCAGTAAAAACAGAGCAGTATCTTCGCAGGCCTTTTCTGAGATATTGCCCCTGCTGGCTCTCCTTCTGCTTGGACTGGCTGGCCAAGTATACCAGTAGCAGTTTCAGAATATAATTTCCACTATTTGGAAGGATTGGAGTGTTTTACTTC

Ace file of the UniGene sp_v1.1_unigene21600

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipid transfer protein n=2 Tax=Picea RepID=O22110_PICAB	-	-	3.0e-12	39%
FL-Next	tr=Lipid transfer protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	39%
Blast2go	lipid transfer protein	-	-	1.89341e-12	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.89341e-12	61%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	1.89341e-12	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O22110

Fln msg: your sequence is shorter than subject: 127 - 173

Fln protein: RRDLGCHSNYLNATKPPSSCCSPLMTEYNANKPCLCDLLNSSELIQQFNVNITEALELPTKCGLSDPSSGCSKLRENSTSSGSTPLPDANTTSSSSKNRAVSSQAFSEILPLLALLLLGLAGQVYQ*

Protein Length: 128

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTATCTGAATGCCACTAAACCCCCCAGTTCGTGCTGCTCTCCGTTGATGACAGAGTACAATGCTAATAAGCCATGCCTGTGTGACCTGTTGAACAGTAGTGAACTCATTCAGCAATTCAATGTCAACATCACTGAGGCATTAGAACTCCCTACCAAATGCGGCCTCAGTGATCCTTCCAGCGGTTGCTCTAAACTTCGTGAAAACAGCACCTCTTCAGGATCTACTCCACTTCCTGACGCTAACACCACTTCTTCCAGCAGTAAAAACAGAGCAGTATCTTCGCAGGCCTTTTCTGAGATATTGCCCCTGCTGGCTCTCCTTCTGCTTGGACTGGCTGGCCAAGTATACCAGTAG___CAGTTTCAGAATATAATTTCCACTATTTGGAAGGATTGGAGTGTTTTACTTC

Fln Alignment:

sp_v1.1_unigene21600___YLNAT-KPPSSCCSPLMTEYNANKPCLCDLLNSSELIQQFNVNITEALELPTKCGLSDPSSGCSKLRENSTSS-----GSTPLPDANTTSSSSKNRAVSSQAFS
O22110_______________YLNATTKPDSSCCSALISVIDKDSQCLCNLLN-SDTVKQLGVNVTQAMKMPAECGKNVSATQCNKTATSGGSSVGKTPTSTPPPSSATPSTTTITKSNSNAAAS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
235	66			33	0.997452
275		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain