SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21598

Length: 773 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21598

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF26 domain containing protein	-	-	2.0e-13	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	serine-threonine protein plant-	-	-	1.28314e-32	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gnk2-homologous domain	IPR002902	-	1.28314e-32	50%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Distance to subject end: 433 aas, atg_distance in limit (1-15): atg_distance = 4, No stop codon before M and low homology subject, your sequence is shorter than subject: 240 - 702

Fln protein: MAEVSPFSFAAVMAALMIAVSFAATDDPQTTVVSKGCSPVPAYTYVNATAFYENLNYVFASLLPNLSKNGFAFSGTDKAGKTDPVYGIAVCRRYLSASECSECFTEAATQLKATCIQSSGGRIHLDGCFLRYENSSSFYGESLGAGTSYCLSSNDSDPQAFSQRAEDLSTQLILNASANNNYAVGSIDDSLYGLAQCWPPLTSPRCQRCLTGAKNLLLTCIPRIEGRGLEAGCFLRYSTY

Protein Length: 241

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCATTGGTTATTGGCGCATTCTACCG_-_ATGGCCGAAGTTTCCCCCTTTTCATTTGCGGCCGTTATGGCGGCCTTGATGATTGCTGTAAGTTTCGCTGCGACAGATGATCCCCAGACTACGGTAGTGAGCAAAGGCTGCAGCCCAGTGCCAGCTTATACGTATGTTAATGCCACAGCGTTCTATGAAAATCTGAATTATGTTTTCGCATCGCTTCTGCCAAATCTCTCCAAAAATGGCTTCGCATTTTCAGGCACAGACAAAGCTGGTAAAACGGACCCAGTTTATGGTATCGCAGTGTGTCGGAGATATTTAAGCGCAAGCGAGTGCTCAGAATGCTTCACGGAAGCGGCGACTCAATTAAAAGCAACCTGCATCCAATCCAGTGGCGGCCGGATTCATCTCGATGGTTGTTTCCTCCGCTACGAGAATTCTAGTAGTTTCTATGGGGAATCCTTGGGTGCCGGGACCTCTTACTGTCTCTCTTCCAATGACAGCGATCCACAGGCATTTTCTCAGAGGGCCGAGGATTTATCCACGCAACTCATATTGAACGCTTCTGCAAATAATAACTATGCTGTTGGCTCCATTGATGACTCTTTATATGGTCTCGCTCAGTGTTGGCCCCCACTTACTTCTCCTAGATGCCAACGGTGCTTGACAGGAGCTAAGAATCTTTTACTTACCTGTATTCCCAGAATTGAAGGCCGAGGTCTCGAGGCGGGCTGTTTTCTACGCTACTCCACTTACT

Fln Alignment:

sp_v1.1_unigene21598___VMAALMIAVSFAATDDPQTTVVSKGCSPVPAYTYVNATAFYENLNYVFASLLPNLSKNGFAFSGTDKAGKTD--PVYGIAVCRRYLSASECSECFTEAATQLKATCIQSSGGRIHLDGCFLRYENSSSFYGESL---GAGTSY-CLSSNDSDPQAFSQRAEDLSTQLILNASANNN-YAVGSIDD------SLYGLAQCWPPLTSPRCQRCLTGA-KNLLLTCIPRIEGRGLEAG---CFLRYSTY
C0PPW7_______________VTVSLCTRMPFAAAD-PETSFVWQDCVNSE---YRDGSAFQRNLNNVLESLVRKVNPSGFNISSIVVGGKNSNSSVYGFVQCRGDLDSSDCEQCASMAKTILVQGCHNISGF-VQLDGCFLRYENRS-FYNDNVLTPNTPTNYMCNLGNSSRPQQFTNAVSALLSNVTAKAAGSPKLFATDSVAGPSSSRGNIYSLAQCWRYLSRTDCGSCLTFAQETLLFGC--HMGAPGAQFGSDKCYLRYEVY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
199	66		33		0.997452
200			66	33	0.997452
204	33			66	0.997452
206		33		66	0.997452
207	66			33	0.997452
210	66		33		0.997452
211	66	33			0.997452
212	90			10	0.90298
217		10	90		0.90298
219	90	10			0.90298
221		10		90	0.90298
458	80	20			0.995493
461	80	20			0.995493
464			20	80	0.995493
465	20			80	0.995493
467		20		80	0.995493
468	80			20	0.995493
476		20	80		0.995493
478	80	20			0.995493
481	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain