SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21516

Length: 2936 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21516
CGTCGTGACCTTGGCTGTCACTCAAAATGTAAAATATAGCGTTATGAAAGCTCCGAAAACGATACCCGTCACAGTAGAAAGTCTTACACACAGAATAGAGGGAAGGAAAAGTCTTACACACAGAACACAGAATACAGGGAAGGAAAGAAAGAAATTATTTTTAACGTTCATAAAGATTAAGACAGATTGTCTTTAGGACAGATTGTTTTTTCAACTGATATATTCGGATCTCATATATTCGGACCCGATATATTCGGCCCTTTTTCTGTATCCAGCTGAGAGGATAATTTTTGGCTCGATTAGTCCAAATGGTTCCCACACTCGCACCAGATTTTGCACGTTTGGTGACGAGTAGCTGTCAATAAATATGTAGTGTCCGAACGGTTCTTCCACCCGCAACAGGTTTTTAGACGGCCGGTCGCTAAGTCGGTTTGAAAAAATACGGAACTAGCCATTAATCATGATGCATAGTACTCCGTGGCTAATCCGCGTATCCTCCTTGCGTAACACGAAGTCTCGACAAATTCGGACCGTGTGCTCGGGATTTTGAAGCATTTGAATTAAGCGTTGTGCCAACAGAGAATAGTGACCATACATCTCATCGCAGTGATCCCGTGACTGTGGCAGAAGACGATCCGGTGCAGAATCGAACCTGCGCTGAATGGGGAACTACAGGGTATGCGTCTGTTTCACTCGCAAGTTCAAATCTGACGCCCTGAGCCCGCCCGAGGACGTCAAAGATCTGTTCAACGAGTACTCGGAGAGCGGCGGGCAGATGACCGTCAAGTCTCTCCACCGATTTCTCCTCGAAGTTCAAGGGCAGAAAGACGCCACTGAGAAGGACGCCGAGCATGTCATCGAAGTGCTGCGGCAGCGCAGGCACGTGAGCGTCTTCCAACGTCAGGGCCTCCATCTGTACGGATTTTTCCAATTTCTCTTCAGCGAAGATCTCAATCCAGTCATCAATTCTAAGATCCACCATGATATGACGGCACCATTGTCTCACTACTTCATATATACAGGTCATAATTCATATTTAACGGGGAATCAGCTGAGCAGTGACTGTAGTGATGTACCTATCATCAAAGCTCTTAGAAGAGGTGTACGGGTCATAGAGTTGGATATTTGGCCAAATTCATCGAAAGATGATGTGCATGTCCTTCATGGAAGGACCTTGACCACTCCTGTAGAGCTTATTAAATGTCTTAGGTCAATAAAGGAGCATGCCTTTGTTGCGTCGCAGTATCCTGTGATAATAACATTGGAGGATCACCTTACTCGAGATCTCCAAGCCAAAGCAGCTGATATGATCACCAAAACCTTTGGTGATTTGCTCTACTACCCCGAATCAGAAGTCTTAGAAGAGTTTCCTTCACCAGAATCCTTGAAAGGTCGCATAATCATCTCAACAAAACCTCCAAAAGAGTACCTAGAAGCTAAAACTGATGAAGTCCAGGGAAATGGGGACAAGGAGAAGCTAAAGACACCTGATGAAGAGCCATGGGGTGATGACATCCCAGATTATAAGCTAGATGTGCCAAGCGAACGGGAGAGTGCTAATGCTGTTGGATCCATTGAAGAAGATTCTGACGATGGTAGTGTCATTTCACAAGTAAATCCAGATAAAGATGTAGCACCTGAGTATAAGCGCCTTATAACCATTAGAGCAGGGAAGCCAAAAGGAGTGTCTTTAAAAGATGCTATAAAAGTTGATGGGAAGCAGGTCAAGCGTGTTAGTTTAAGTGAACCACAACTTCAAAAGGTTGCTAGGTCTCATCCAACCCATGTTGTTAGATTTACCCACAAGAACTTCTTGAGAATATATCCAAAGGGTATTCGTATTGATTCATCAAACTATAACCCTTTGGTTGGTTGGACTCATGGAGCTCAGATGGTGGCCTCCAACATGCAGGGATATGGAAGGCAGCTTTGGTTAGTGCACGGTTTCTTTAGAGCCAATGGGGGCTGCGGTTATGTCAAAAAGCCTGACTTTCTTCTTCCAAACGGATCTGAAGATGATGACCAACTTATTTTAATCCAAATACATCAAGACCAGTCAAGACCACACTGAAGGTCAAAATATATATGGGAGATGGATGGAATCAGGACTTCAAGAAAACACACTTTGATACCTATTCTCCTCCTGACTTTTACACCAGGGTTGGGATTGCAGGTGTGCCTGCAGATACTATCATGAAAAAGACAAGGACAATAGAAGATGACTGGGTCCCCTGTTGGAATGAAGATTTTGTTTTTCCATTGTCTGTCCCTGAATTAGCATTGCTTCGTATTGAAGTTCATGAGTACGATATGTCCGAAAAAGATGACTTTGGTGGCCAGACATGCTTACCTGTGTCAGAGTTGAAGACAGGGATTCGCTCAATTCCATTATGTGACAAGAAAGGAGAGAAATACAAGTCTGTGAGACTTTTGGTGCAAATTGATTTCTGTTAGCAATCATTCCTGCAGGGATAACCGTATTGTAATATCTATCTATATATATCCAGTTTTGGGATTCTGGTTTAGTTTGAATTTTGGCAGGGTAGATCTATCTTTGTCCATTCCTTTTGTGAATATTTTTTGTTAATAATTATAGTTTGTAATATAGGATATAAATATCTTTGGGATGTATTTTAGGATTCCTACAAAAGATGTTTGGTAGCCAAAATTGAGTCTGGACTCTGAAGAACTCACGCACTCGCTTTCTGATGTGACTCTTGATAGTGAGAATCTCTAAGACTTACGGTGCGAATTGATTCTACTAGCAATCATTCTTGCAGGGAGAAGTGTCCTGTGAAATATATCTATGGATCCGATTTTGGGATTCTGGTTTTGTTTAAACTTTGGCAGAGGAGATCTAACGAACTCTGTCTATTCCTTTCGTTAATATTTTTTGTAATAATAATATTTTGTAACATAGGGTATGAATATCTCTG

Ace file of the UniGene sp_v1.1_unigene21516

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9T5Y1_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	phospholipase c	-	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKW9

Fln msg: Separated hits, possible frame ERROR between 2014 and 2032,

Fln protein: MGNYRVCVCFTRKFKSDALSPPEDVKDLFNEYSESGGQMTVKSLHRFLLEVQGQKDATEKDAEHVIEVLRQRRHVSVFQRQGLHLYGFFQFLFSEDLNPVINSKIHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALRRGVRVIELDIWPNSSKDDVHVLHGRTLTTPVELIKCLRSIKEHAFVASQYPVIITLEDHLTRDLQAKAADMITKTFGDLLYYPESEVLEEFPSPESLKGRIIISTKPPKEYLEAKTDEVQGNGDKEKLKTPDEEPWGDDIPDYKLDVPSERESANAVGSIEEDSDDGSVISQVNPDKDVAPEYKRLITIRAGKPKGVSLKDAIKVDGKQVKRVSLSEPQLQKVARSHPTHVVRFTHKNFLRIYPKGIRIDSSNYNPLVGWTHGAQMVASNMQGYGRQLWLVHGFFRANGGCGYVKKPDFLLPNGSxxxxxxxFNPNTSRPVKTTLKVKIYMGDGWNQDFKKTHFDTYSPPDFYTRVGIAGVPADTIMKKTRTIEDDWVPCWNEDFVFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELKTGIRSIPLCDKKGEKYKSVRLLVQIDFC*

Protein Length: 599

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGTAAAATATAGCGTTATGAAAGCTCCGAAAACGATACCCGTCACAGTAGAAAGTCTTACACACAGAATAGAGGGAAGGAAAAGTCTTACACACAGAACACAGAATACAGGGAAGGAAAGAAAGAAATTATTTTTAACGTTCATAAAGATTAAGACAGATTGTCTTTAGGACAGATTGTTTTTTCAACTGATATATTCGGATCTCATATATTCGGACCCGATATATTCGGCCCTTTTTCTGTATCCAGCTGAGAGGATAATTTTTGGCTCGATTAGTCCAAATGGTTCCCACACTCGCACCAGATTTTGCACGTTTGGTGACGAGTAGCTGTCAATAAATATGTAGTGTCCGAACGGTTCTTCCACCCGCAACAGGTTTTTAGACGGCCGGTCGCTAAGTCGGTTTGAAAAAATACGGAACTAGCCATTAATCATGATGCATAGTACTCCGTGGCTAATCCGCGTATCCTCCTTGCGTAACACGAAGTCTCGACAAATTCGGACCGTGTGCTCGGGATTTTGAAGCATTTGAATTAAGCGTTGTGCCAACAGAGAATAGTGACCATACATCTCATCGCAGTGATCCCGTGACTGTGGCAGAAGACGATCCGGTGCAGAATCGAACCTGCGCTGA_-_ATGGGGAACTACAGGGTATGCGTCTGTTTCACTCGCAAGTTCAAATCTGACGCCCTGAGCCCGCCCGAGGACGTCAAAGATCTGTTCAACGAGTACTCGGAGAGCGGCGGGCAGATGACCGTCAAGTCTCTCCACCGATTTCTCCTCGAAGTTCAAGGGCAGAAAGACGCCACTGAGAAGGACGCCGAGCATGTCATCGAAGTGCTGCGGCAGCGCAGGCACGTGAGCGTCTTCCAACGTCAGGGCCTCCATCTGTACGGATTTTTCCAATTTCTCTTCAGCGAAGATCTCAATCCAGTCATCAATTCTAAGATCCACCATGATATGACGGCACCATTGTCTCACTACTTCATATATACAGGTCATAATTCATATTTAACGGGGAATCAGCTGAGCAGTGACTGTAGTGATGTACCTATCATCAAAGCTCTTAGAAGAGGTGTACGGGTCATAGAGTTGGATATTTGGCCAAATTCATCGAAAGATGATGTGCATGTCCTTCATGGAAGGACCTTGACCACTCCTGTAGAGCTTATTAAATGTCTTAGGTCAATAAAGGAGCATGCCTTTGTTGCGTCGCAGTATCCTGTGATAATAACATTGGAGGATCACCTTACTCGAGATCTCCAAGCCAAAGCAGCTGATATGATCACCAAAACCTTTGGTGATTTGCTCTACTACCCCGAATCAGAAGTCTTAGAAGAGTTTCCTTCACCAGAATCCTTGAAAGGTCGCATAATCATCTCAACAAAACCTCCAAAAGAGTACCTAGAAGCTAAAACTGATGAAGTCCAGGGAAATGGGGACAAGGAGAAGCTAAAGACACCTGATGAAGAGCCATGGGGTGATGACATCCCAGATTATAAGCTAGATGTGCCAAGCGAACGGGAGAGTGCTAATGCTGTTGGATCCATTGAAGAAGATTCTGACGATGGTAGTGTCATTTCACAAGTAAATCCAGATAAAGATGTAGCACCTGAGTATAAGCGCCTTATAACCATTAGAGCAGGGAAGCCAAAAGGAGTGTCTTTAAAAGATGCTATAAAAGTTGATGGGAAGCAGGTCAAGCGTGTTAGTTTAAGTGAACCACAACTTCAAAAGGTTGCTAGGTCTCATCCAACCCATGTTGTTAGATTTACCCACAAGAACTTCTTGAGAATATATCCAAAGGGTATTCGTATTGATTCATCAAACTATAACCCTTTGGTTGGTTGGACTCATGGAGCTCAGATGGTGGCCTCCAACATGCAGGGATATGGAAGGCAGCTTTGGTTAGTGCACGGTTTCTTTAGAGCCAATGGGGGCTGCGGTTATGTCAAAAAGCCTGACTTTCTTCTTCCAAACGGATCTGAxxxxxxxxxxxxxxxxxxTTTTAATCCAAATACATCAAGACCAGTCAAGACCACACTGAAGGTCAAAATATATATGGGAGATGGATGGAATCAGGACTTCAAGAAAACACACTTTGATACCTATTCTCCTCCTGACTTTTACACCAGGGTTGGGATTGCAGGTGTGCCTGCAGATACTATCATGAAAAAGACAAGGACAATAGAAGATGACTGGGTCCCCTGTTGGAATGAAGATTTTGTTTTTCCATTGTCTGTCCCTGAATTAGCATTGCTTCGTATTGAAGTTCATGAGTACGATATGTCCGAAAAAGATGACTTTGGTGGCCAGACATGCTTACCTGTGTCAGAGTTGAAGACAGGGATTCGCTCAATTCCATTATGTGACAAGAAAGGAGAGAAATACAAGTCTGTGAGACTTTTGGTGCAAATTGATTTCTGTTAG___CAATCATTCCTGCAGGGATAACCGTATTGTAATATCTATCTATATATATCCAGTTTTGGGATTCTGGTTTAGTTTGAATTTTGGCAGGGTAGATCTATCTTTGTCCATTCCTTTTGTGAATATTTTTTGTTAATAATTATAGTTTGTAATATAGGATATAAATATCTTTGGGATGTATTTTAGGATTCCTACAAAAGATGTTTGGTAGCCAAAATTGAGTCTGGACTCTGAAGAACTCACGCACTCGCTTTCTGATGTGACTCTTGATAGTGAGAATCTCTAAGACTTACGGTGCGAATTGATTCTACTAGCAATCATTCTTGCAGGGAGAAGTGTCCTGTGAAATATATCTATGGATCCGATTTTGGGATTCTGGTTTTGTTTAAACTTTGGCAGAGGAGATCTAACGAACTCTGTCTATTCCTTTCGTTAATATTTTTTGTAATAATAATATTTTGTAACATAGGGTATGAATATCTCTG

Fln Alignment:

sp_v1.1_unigene21516___MGNYRVCVCFTRKFKSDALSPPEDVKDLFNEYSESGGQMTVKSLHRFLLEVQGQKDATEKDAEHVIEVLRQRRHVSVFQRQGLHLYGFFQFLFSEDLNPVINSKIHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALRRGVRVIELDIWPNSSKDDVHVLHGRTLTTPVELIKCLRSIKEHAFVASQYPVIITLEDHLTRDLQAKAADMITKTFGDLLYYPESEVLEEFPSPESLKGRIIISTKPPKEYLEAKTDEVQGNGDKEKLKTPDEEPWGDDIPDYKLDVPSERESANAVGSIEEDSDDGSVISQVNPDKDVAPEYKRLITIRAGKPKGVSLKDAIKVDGKQVKRVSLSEPQLQKVARSHPTHVVRFTHKNFLRIYPKGIRIDSSNYNPLVGWTHGAQMVASNMQGYGRQLWLVHGFFRANGGCGYVKKPDFLLPNGSExxxxxxFNPNTSRPVKTTLKVKIYMGDGWNQDFKKTHFDTYSPPDFYTRVGIAGVPADTIMKKTRTIEDDWVPCWNEDFVFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELKTGIRSIPLCDKKGEKYKSVRLLVQIDF
B8LKW9_______________MGSYRVCVCFTRKFKSDALSPPGDVKDLFNKYSESGGQMTVRNLHRFLVEVQGQTDATEKDAEHVLEVLRQRRHMSVFQRHSLNLDGFFHFLFSDDLNPVIDSKVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDAPIIKALNRGVRVIELDIWPNSAKDDVLVLHGRTLTSPVEFIKCIRSIKEHAFVASQYPVIITLEDHLTRDLQAKAAETITKTFGELLYYPKSEVLEEFPSPESLKGRIIISTKPPKEYLETKTTELQGDGDKEKLKTPDEEPWGDDIPDYGPDVPNERESADPAGPIEEDSGDDEGISQVNPDKDVAPEYKRLITIRAGKPKGVSLKDSIRVDGKQVKRVSLSEPQLQKVARSHPTHVVRFTHNNFLRIYPKGTRIDSSNYNPLLAWTHGAQMVAFNMQGYGRQLWLVHGFFRANGGCGYVKKPDFLLPNGSExxxxxxFDPKAPRPVKTTLKVKIYMGDGWNQEFKKTHFDTYSPPDFYTRVGIAGVPADTIMKRTRAIEDDWFPCWNEEFVFPLTVPELAVLRVEVHEYDMSEKDDFGGQTCVPVAELKSGIRTIPLCNKKGEKYKSVRLLVRIDF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
191		33		66	0.997452
1565		22		77	0.999999
2417	88	11			0.923564
2419	88			11	0.923564
2420	88	11			0.923564
2421	88		11		0.923564
2425	88			11	0.923564
2426	88			11	0.923564
2428			11	88	0.923564
2433		11	88		0.923564
2435		11	88		0.923564
2436	88			11	0.923564
2593			75	25	0.996473
2628		85		14	0.993533
2755	41		58		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain