SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21467

Length: 448 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21467
CGTCGTGACCTTGGCTGTCACTCATTGGACCTCACCACATGCCCAAAATTTTTTCTTTAAGCCTGCAGATTTCGATTGGTTCATTCATCCGGTTACAACTTTTGTCTAAAGCTGTGGCATTACGAGTGTAGAAGAGAGCAAAGGATTGTCAGTGCAGTTGACAGGAGGAGACATGAGCAACAACATGAGCAACAGGTCCAGTTCCAGAACCCTTTTCAGCGGCAGCGCAGAGGATAGAAGCGATGCCATAGATTGGGAATTGAGGCCTGGAGGCATGTTGGTTCAGAAGAGAGATGACGGTGGCGCTGCAGCTGGGCCTATGATTAAGGTTAAGGTTTCCCATGGTTCATACCAGCGTGAAGTTTCGATTCCTGCGCAGGCTACCTTTGGGGACCTCAAGAAGCTATTGTCCCAGGAGACTGGGTTGGAGCCTCAGGAACAAAGGCTT

Ace file of the UniGene sp_v1.1_unigene21467

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding protein, putative	-	-	6.0e-22	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	protein	-	-	1.56117e-22	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin supergroup	IPR019955	-	1.56117e-22	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZJ4

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 92 - 254

Fln protein: MSNNMSNRSSSRTLFSGSAEDRSDAIDWELRPGGMLVQKRDDGGAAAGPMIKVKVSHGSYQREVSIPAQATFGDLKKLLSQETGLEPQEQRL

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGACCTCACCACATGCCCAAAATTTTTTCTTTAAGCCTGCAGATTTCGATTGGTTCATTCATCCGGTTACAACTTTTGTCTAAAGCTGTGGCATTACGAGTGTAGAAGAGAGCAAAGGATTGTCAGTGCAGTTGACAGGAGGAGAC_-_ATGAGCAACAACATGAGCAACAGGTCCAGTTCCAGAACCCTTTTCAGCGGCAGCGCAGAGGATAGAAGCGATGCCATAGATTGGGAATTGAGGCCTGGAGGCATGTTGGTTCAGAAGAGAGATGACGGTGGCGCTGCAGCTGGGCCTATGATTAAGGTTAAGGTTTCCCATGGTTCATACCAGCGTGAAGTTTCGATTCCTGCGCAGGCTACCTTTGGGGACCTCAAGAAGCTATTGTCCCAGGAGACTGGGTTGGAGCCTCAGGAACAAAGGCTT

Fln Alignment:

sp_v1.1_unigene21467___SGSA-EDRSDAIDWELRPGGMLVQKRD---DGGAAAGPMIKVKVSHGSYQREVSIPAQATFGDLKKLLSQETGLEPQEQRL
A9NZJ4_______________SGSAAKDVADSIDWEVRPGGMLVQRRDPDADQESAPCPKIKVRVTHGSSLHEVSVSMQATFGELKKLLAPETGLEPQDQKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
225		85		15	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain