SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21450

Length: 657 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21450

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	3.9937e-43	100%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	0.0	100%
Blast2go	gdp-mannose pyrophosphorylase	-	-	7.553e-43	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	7.553e-43	96%

Source	KEGGs	Term	e value	Identity
Blast2go	Fructose and mannose metabolism	00051	7.553e-43	96%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	7.553e-43	96%
Blast2go	Metabolic pathways	01100	7.553e-43	96%
Blast2go	Biosynthesis of secondary metabolites	01110	7.553e-43	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	7.553e-43	96%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	7.553e-43	96%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	7.553e-43	96%
Blast2go	response to ozone	GO:0010193	Biological Process	7.553e-43	96%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	7.553e-43	96%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	7.553e-43	96%
Blast2go	response to heat	GO:0009408	Biological Process	7.553e-43	96%
Blast2go	response to salt stress	GO:0009651	Biological Process	7.553e-43	96%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	7.553e-43	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleotidyl transferase	IPR005835	-	7.553e-43	96%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
59		50		50	1.0
68	50		50		1.0
79	50	50			1.0
86	50		50		1.0
94			75	25	0.996473
105	50		50		1.0
109		50	50		1.0
119		50		50	1.0
160	50		50		1.0
187	50		50		1.0
192		50		50	1.0
197		50		50	1.0
198		50	50		1.0
208	50	50			1.0
218	50	50			1.0
258		33		66	1.0
262	33			66	1.0
279		33	66		1.0
283			16	83	0.994512
296		25	75		0.996473
343	66			33	1.0
344		33	66		1.0
346	66			33	1.0
347		66	33		1.0
351	66			33	1.0
355	66	33			1.0
356	66			33	1.0
358			66	33	1.0
360	40	60			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain