SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21432

Length: 378 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene21432
CGTCGTGACCTTGGCTGTCACTCAAATTGTAATTCTGGATGGAAAGATGAAGAAGCAGCGACAGATAAAGGCATCGACCCAGGCACCAAATGCAACCAACACTTGTCCGGGTACTCTGCAATATGAGTTTTATACGCCTAAAACTAATTTCAATGGATCCCTACAGCTGGGTTGTGATACGTTTCTCCTTTAAAATGTACTTGGCAGATTATATCCCGAAAGCCAATTTTTACAAAGTAGAAGCTATTTTGAGGCCATGGCGCATGTCTCATGTTAATTCGGGTTTATTGAAATTGGGGGTTCATGGCGTAACTGTCTCTGATGTTAAAGGTTTTGGAGCTCAGGGCTCATCTGCAGAGCGGCAAGCAGGCTCCGAGT

Ace file of the UniGene sp_v1.1_unigene21432

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PII-like protein n=1 Tax=Pinus pinaster RepID=Q70YP6_PINPS	-	-	4.0e-26	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	pii protein	-	-	7.42052e-30	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	7.42052e-30	83%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	7.42052e-30	83%
Blast2go	response to light stimulus	GO:0009416	Biological Process	7.42052e-30	83%
Blast2go	acetylglutamate kinase regulator activity	GO:0010307	Molecular Function	7.42052e-30	83%
Blast2go	oxygen transporter activity	GO:0005344	Molecular Function	7.42052e-30	83%
Blast2go	oxygen binding	GO:0019825	Molecular Function	7.42052e-30	83%
Blast2go	protein binding	GO:0005515	Molecular Function	7.42052e-30	83%
Blast2go	cell wall	GO:0005618	Cellular Component	7.42052e-30	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.42052e-30	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.42052e-30	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nitrogen regulatory protein PII	IPR002187	-	7.42052e-30	83%
Blast2go	Nitrogen regulatory PII-like, alpha/beta	IPR011322	-	7.42052e-30	83%
Blast2go	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	7.42052e-30	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ11

Fln msg: Separated hits, possible frame ERROR between 151 and 207, Distance to subject end: 77 aas, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 111 - 175

Fln protein: MKKQRQIKASTQAPNATNTCPGTLQYEFYTPKTNxxxxxxxxxxxxxxxxxxxxDYIPKANFYKVEAILRPWRMSHVNSGLLKLGVHGVTVSDVKGFGAQGSSAERQAGSE

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGTAATTCTGGATGGAAAG_-_ATGAAGAAGCAGCGACAGATAAAGGCATCGACCCAGGCACCAAATGCAACCAACACTTGTCCGGGTACTCTGCAATATGAGTTTTATACGCCTAAAACTAATTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATTATATCCCGAAAGCCAATTTTTACAAAGTAGAAGCTATTTTGAGGCCATGGCGCATGTCTCATGTTAATTCGGGTTTATTGAAATTGGGGGTTCATGGCGTAACTGTCTCTGATGTTAAAGGTTTTGGAGCTCAGGGCTCATCTGCAGAGCGGCAAGCAGGCTCCGAGT

Fln Alignment:

sp_v1.1_unigene21432___QIVILDGKMKKQRQIKASTQAPNATNTCPGTLQYEFYTPKTNFxxxxxxxxxxxxxxxxxxxDYIPKANFYKVEAILRPWRMSHVNSGLLKLGVHGVTVSDVKGFGAQGSSAERQAGSE
A9NZ11_______________RMVFLNGKMKKKQQIKASSQAPNGTNTCPD------YVPEANFxxxxxxxxxxxxxxxxxxxDYVPEANFYKIEAILRPWRISHVTSGLLKMGIRGLTVSDVRGFGAQGGSPERQAGSE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain