SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21415

Length: 2849 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21415
ATTTTCTTAAATTCGCTGAAATGTAGTTACGTGCTCCTCAAACACACAGAGGTCCACACCGCCCTTTGGGTTTCTCGATTGCTCGATAAAGGACCCGCGAAATCTCAGAGGTTCTGTTACATGTTACATAATGAAATTGCACATTTGATTTTCATTTTTACACTAGTTACTAGTTCGTCACCTGTGCAACAATGGCGCACAAGGGAGAATCTTCAGAACCGAAAGGAGTCAAAAGGGATTTCAGCACTGCTATTTTGGAGCGGAAGAAGGCTCCCAATCGCCTTGTTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAATTACAGCTCTTCCGCGGAGATACAATTCTTATCAAGGGCAAGAAGAGAAAGGATACGATTTGTATCGCTCTCGCTGATGAGACGTGCGAAGAGCCCAGGATTAGAATGAACAAGGTTGTGCGTTCGAATCTGAGGGTTCGACTGGGCGATGTTGTTTCGGTTCATCAGTGCCCCGATGTAAAGTACGGCAAGCGTGTGCATATCCTGCCTATTGATGATACCATCGAGGGTGTTACTTGGCAATCTGTTCGATGCATATTTAAAGCCCTATTTCATGGAGGCCTATCGCCCAGTAAGGAAAGGAGACCTTTTCCTTGTTAGAGGTGGAATGCGCAGTGTAGAGTTCAAAGTAATAGAGACGGACCCTGGGGAATATTGTGTTGTTTCTCCTGATACTGAGATCTTTTGTGAGGGAGAGCCTGTGAAGCGGGAGGATGAAGATAGATTGGATGAAGTTGGTTATGACGATGTTGGCGGTGTAAGGAGGCAAATGGCCCAGATTCGTGAATTGGTTGAGCTTCCACTGAGGCACCCACAGCTCTTTAAATCAATTGGTGTTAAACCACCAAAGGGAATTTTGCTCTTTGGACCACCTGGTTCAGGGAAAACCTTAATTGCTAGGGCAGTAGCCAATGAAACTGGTGCTTTCTTTTTCTTAATTAATGGGCCCGAAATTATGTCGAAGTTGGCTGGAGAAAGTGAAAGCAATCTGAGGAAAGCCTTTGAGGAGGCAGAGAAGAATGCCCCATCCATTATTTTTATTGATGAAATTGATTCAATAGCACCCAAAAGAGAAAAGACACATGGTGAGGTTGAGAGGCGAATTGTTTCTCAACTTCTGACACTGATGGATGGGCTAAAAGCTCGAGCCCATGTTATTGTGATAGGAGCAACTAACCGGCCAAATAGTATTGACCCAGCTCTTAGAAGGTTTGGAAGGTTTGACAGGGAAATTGATATTGGGGTTCCTGATGAAGTGGGGCGGCTGGAAGTCCTTCGTATACATACAAAGAATATGAAGCTTTCGGACGATGTTGATCTTGAACGAATTGCAAAGGACACACATGGATATGTTGGAGCTGATCTTGCAGCTCTTTGCACCGAGGCTGCGCTACAGTGCATCAGGGAAAAAATGGATGTTATAGACTTGGAAGATGAGACCATCGATGCTGAAATCCTCAATTCTATGGCTGTTACAAATGAGCACTTCCAGACTGCGTTGGGCACCAGTAACCCATCTGCCTTACGTGAAACTGTTGTTGAAGTGCCTAATGTTTCTTGGGATGATATTGGTGGTTTGGAAAATGTCAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAATTTGAAAAGTTTGGCATGTCCCCTTCGAAAGGAGTGCTCTTTTACGGGCCACCAGGTTGTGGTAAGACGCTGCTTGCAAAAGCTATTGCGAATGAGTGCCAGGCCAATTTTATCAGTGTAAAAGGCCCAGAATTATTAACTATGTGGTTTGGAGAAAGTGAGGCTAATGTTCGAGAGATTTTTGACAAAGCTCGACAGTCAGCGCCTTGCGTCTTGTTTTTTGATGAGCTTGATTCTATTGCTACACAGCGAGGGAGCAGTGTTGGCGATGCAGGTGGTGCTGCAGACAGAGTCCTAAATCAGTTGTTAACAGAGATTGGATGGGATGACAGCCAAGAAAACTGTTTTCATTATTGGGGCCACAAATAGGCCAGATATCATTGATCCCGCATTGCTAAGGCCTGGTAGGCTTGACCAGTTAATTTACATACCATTACCAGATGAGAGTTCACGCCTGCAAATTTTTAAAGCATGCTTGAGAAAGTCACCGGTTGCCAAGGATGTTGATTTGACTGCTTTAGCTCGTTATACCCAAGGATTCAGTGGAGCTGATATTACAGAAATTTGTCAGCGGGCTTGCAAATATGCCATTCGAGAAAACATCGAGCAGGATATTGAACGTGAAAGGAAGAGAAAAGAAAATCCTGAAGCTATGGATGAGGATGATAGTGAGGGAGTATCTGAAATAAAAGCAGCTCATTTTGAGGAGTCCATGAAATATGCTCGAAGGAGTGTCAGCGATGCTGATATTCGAAAATATCAAGCATTTGCACAGACGCTGCAGCAGTCTCGAGGTTTTGGTACAGAATTCCGATTTGCAGAGAAGCCAGGTGGTACAGCGGCAGCTGGTTCTTCAGAACCATTTACTGGAGTAGAAAATAAAGAAGACGATGACTTGTATAGTTGATAGGTCCCGTAGCATTAACACTGCCTGATTATTAAAGTGGCATGTTTATCTTCTTTTGGGCAACTTAGCGTATTTCCTGATACATTGAAAAGAATTTATGGAGGTTGTTCTAGAGAAGACCTTGTTCACAAGGTAGTCGATGCTATGAAAATCTGCTTCTTCTTTAACGCGTAGATAACTATTGTCTTAATATCAATCAATGTGTGAGTCTTCGTAGACTTTTTTCTTAAAG

Ace file of the UniGene sp_v1.1_unigene21415

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division cycle protein 48 homolog n=12 Tax=Magnoliophyta RepID=CDC48_SOYBN	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	spermatogenesis associated factor	-	-	93%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	93%
Blast2go	ATPase, AAA-type, core	IPR003959	-	93%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	93%
Blast2go	CDC48, domain 2	IPR004201	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: your sequence is longer than subject: 505 - 416

Fln protein: MIPSRVLLGNLFDAYLKPYFMEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVSPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRRQMAQIRELVELPLRHPQLFKSIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEIGWDDSQENCFHYWGHK*

Protein Length: 506

Fln nts: ATTTTCTTAAATTCGCTGAAATGTAGTTACGTGCTCCTCAAACACACAGAGGTCCACACCGCCCTTTGGGTTTCTCGATTGCTCGATAAAGGACCCGCGAAATCTCAGAGGTTCTGTTACATGTTACATAATGAAATTGCACATTTGATTTTCATTTTTACACTAGTTACTAGTTCGTCACCTGTGCAACAATGGCGCACAAGGGAGAATCTTCAGAACCGAAAGGAGTCAAAAGGGATTTCAGCACTGCTATTTTGGAGCGGAAGAAGGCTCCCAATCGCCTTGTTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAATTACAGCTCTTCCGCGGAGATACAATTCTTATCAAGGGCAAGAAGAGAAAGGATACGATTTGTATCGCTCTCGCTGATGAGACGTGCGAAGAGCCCAGGATTAGAATGAACAAGGTTGTGCGTTCGAATCTGAGGGTTCGACTGGGCGATGTTGTTTCGGTTCATCAGTGCCCCGATGTAAAGTACGGCAAGCGTGTGCATATCCTGCCTATTG_-_ATGATACCATCGAGGGTGTTACTTGGCAATCTGTTCGATGCATATTTAAAGCCCTATTTCATGGAGGCCTATCGCCCAGTAAGGAAAGGAGACCTTTTCCTTGTTAGAGGTGGAATGCGCAGTGTAGAGTTCAAAGTAATAGAGACGGACCCTGGGGAATATTGTGTTGTTTCTCCTGATACTGAGATCTTTTGTGAGGGAGAGCCTGTGAAGCGGGAGGATGAAGATAGATTGGATGAAGTTGGTTATGACGATGTTGGCGGTGTAAGGAGGCAAATGGCCCAGATTCGTGAATTGGTTGAGCTTCCACTGAGGCACCCACAGCTCTTTAAATCAATTGGTGTTAAACCACCAAAGGGAATTTTGCTCTTTGGACCACCTGGTTCAGGGAAAACCTTAATTGCTAGGGCAGTAGCCAATGAAACTGGTGCTTTCTTTTTCTTAATTAATGGGCCCGAAATTATGTCGAAGTTGGCTGGAGAAAGTGAAAGCAATCTGAGGAAAGCCTTTGAGGAGGCAGAGAAGAATGCCCCATCCATTATTTTTATTGATGAAATTGATTCAATAGCACCCAAAAGAGAAAAGACACATGGTGAGGTTGAGAGGCGAATTGTTTCTCAACTTCTGACACTGATGGATGGGCTAAAAGCTCGAGCCCATGTTATTGTGATAGGAGCAACTAACCGGCCAAATAGTATTGACCCAGCTCTTAGAAGGTTTGGAAGGTTTGACAGGGAAATTGATATTGGGGTTCCTGATGAAGTGGGGCGGCTGGAAGTCCTTCGTATACATACAAAGAATATGAAGCTTTCGGACGATGTTGATCTTGAACGAATTGCAAAGGACACACATGGATATGTTGGAGCTGATCTTGCAGCTCTTTGCACCGAGGCTGCGCTACAGTGCATCAGGGAAAAAATGGATGTTATAGACTTGGAAGATGAGACCATCGATGCTGAAATCCTCAATTCTATGGCTGTTACAAATGAGCACTTCCAGACTGCGTTGGGCACCAGTAACCCATCTGCCTTACGTGAAACTGTTGTTGAAGTGCCTAATGTTTCTTGGGATGATATTGGTGGTTTGGAAAATGTCAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAATTTGAAAAGTTTGGCATGTCCCCTTCGAAAGGAGTGCTCTTTTACGGGCCACCAGGTTGTGGTAAGACGCTGCTTGCAAAAGCTATTGCGAATGAGTGCCAGGCCAATTTTATCAGTGTAAAAGGCCCAGAATTATTAACTATGTGGTTTGGAGAAAGTGAGGCTAATGTTCGAGAGATTTTTGACAAAGCTCGACAGTCAGCGCCTTGCGTCTTGTTTTTTGATGAGCTTGATTCTATTGCTACACAGCGAGGGAGCAGTGTTGGCGATGCAGGTGGTGCTGCAGACAGAGTCCTAAATCAGTTGTTAACAGAGATTGGATGGGATGACAGCCAAGAAAACTGTTTTCATTATTGGGGCCACAAATAG___GCCAGATATCATTGATCCCGCATTGCTAAGGCCTGGTAGGCTTGACCAGTTAATTTACATACCATTACCAGATGAGAGTTCACGCCTGCAAATTTTTAAAGCATGCTTGAGAAAGTCACCGGTTGCCAAGGATGTTGATTTGACTGCTTTAGCTCGTTATACCCAAGGATTCAGTGGAGCTGATATTACAGAAATTTGTCAGCGGGCTTGCAAATATGCCATTCGAGAAAACATCGAGCAGGATATTGAACGTGAAAGGAAGAGAAAAGAAAATCCTGAAGCTATGGATGAGGATGATAGTGAGGGAGTATCTGAAATAAAAGCAGCTCATTTTGAGGAGTCCATGAAATATGCTCGAAGGAGTGTCAGCGATGCTGATATTCGAAAATATCAAGCATTTGCACAGACGCTGCAGCAGTCTCGAGGTTTTGGTACAGAATTCCGATTTGCAGAGAAGCCAGGTGGTACAGCGGCAGCTGGTTCTTCAGAACCATTTACTGGAGTAGAAAATAAAGAAGACGATGACTTGTATAGTTGATAGGTCCCGTAGCATTAACACTGCCTGATTATTAAAGTGGCATGTTTATCTTCTTTTGGGCAACTTAGCGTATTTCCTGATACATTGAAAAGAATTTATGGAGGTTGTTCTAGAGAAGACCTTGTTCACAAGGTAGTCGATGCTATGAAAATCTGCTTCTTCTTTAACGCGTAGATAACTATTGTCTTAATATCAATCAATGTGTGAGTCTTCGTAGACTTTTTTCTTAAAG

Fln Alignment:

sp_v1.1_unigene21415___EVGYDDVGGVRRQMAQIRELVELPLRHPQLFKSIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE--------VERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPS
A9NVV9_______________KVSWEDIGGLHDVKKKLQQAVEWPIKHAAAFARLGISPARGVLLHGPPGCSKTTLVNAAAHASQANLFSLSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAIAAKRNGREEENSSGNGAAVGERLLSTLLTEIDGLEITKGVLVLGATNRPEAIDAALMRPGRFDLVLYVPPPDLEGRIEVLRVHTRNMKLEINVDLPQIAKKTQLFTGAELAGLCREAAIVALRE-----DICADT----------VCSRHFELARNSLRPS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
506			17	82	1.0
507			11	82	0.999919
508		88	11		0.999952
581		10		90	0.90298
588			33	33	0.997753
596		33		66	0.997452
634		75		25	0.996473
673	80		20		0.995493
1012		90		10	0.90298
1059	87	12			0.992554
1075		14		85	0.993533
1405	81		18		1.0
2243		87		12	0.992554
2244		87	12		0.992554
2245		87	12		0.992554
2246	87		12		0.992554
2838	11	88			0.923564
2839	20			80	0.995493
2846		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain