SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21405

Length: 2036 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene21405
CGTCGTGACCTTGGCTGTCACTCAACCACCCACTCGTCCTCCTCTCCACCACCACCACCGAAGACATCAAGTGGATCTAATACACCATCCTCTACAGGAACCAACAACAGCAGCAGCAGCAGCAGCTTTTCGACTACTGCCATTGTTGGCGTTGCTGTGGCCGGTGTCGTTGGAGTTCTTTTGCTTTGCATACTCATAGCGTGTTGCTGCAGGAAGAAGAGAAAGAGGAGGCCAGAGTTCATTCCTGGACAGTATTATGGAGCCCCACCTCAACCTTCCAAAGATGACTATTATGGAGGAAGACCTCAATACTGGCAAAATAATGCTCCTCAGCCAGGGGATAATGCTGTCAAGATTCGTCCACCTTCATCCCCCCCATCGCATCCTGTCATTCCTAAACCCCCACCATCACTTCCTGATGTCATGCCACCTCCCCCACCTCCCCCACCGGTATTTAGCAGTGGAGATGATTCAAGCTCTGGTTTTTCAGGATCAAAGCAGCCATTACCTCCTCCTTCTCCAGGAATTGGTCTTGGTATCTCAAGAACATTCACCTATGAAGATCTAGAGGCGGCTACAAATGGCTTCTCACGGACAAATCTATTAGGACAGGGGGGATTTGGATATGTATACAAAGGTATTCTTCCAGGAAGCAAAACTATAGCAGTGAAGCAGCTCAAAGTTGGTGGGAGCCAGGGAGAGCGTGAGTTTCAAGCAGAAGTGGAAATAATTAGTCGTGTGCATCATCGTCACCTTGTCTCATTGGTGGGTTACTGCATAGCTGGTAGCCAACGATTGCTTGTTTATGAGTTTGTTCCTAATGATACATTAGAGCACCATCTACATGGTAAAGGTCAGCCAACTATGGATTGGCCAACTAGATTGAAGATTGCAACAGGAGCAGCTCGTGGGCTTGCTTATTTACATGAAGACTGTTATCCGAAGATTATTCATAGAGACATCAAAGCTTCAAATATTCTTCTTGATTCCAACTTCGAAGCAAAGGTTGCAGACTTTGGCCTTGCAAAACTTGCTTCAGAAGGTTTTACTCATGTCTCCACAAGGGTTATGGGCACTTTTGGGTATTTGGCACCAGAATATGCATCAACTGGAAAATTGACAGATAAATCTGATGTTTTCTCATTTGGTGTTATGCTGCTTGAGTTGATCACTGGGCGCCGGCCTGTAGATACAACTCCATCATTTTCAGAAGACAGTCTAGTGGATTGGGCCCGACCCTTGCTTGCTCGAGCAATGGAAGACGGCAATGTAGATGCCCTTGCTGATATCCGGATACAGCACAACTATAACGCGAATGAGATGATGCGGGTAGTTGCATGTGCAGCTTCTTGTGTTCGACATTCTGCAAGAAAGCGCCCTCGTATGGGACAGATAGTACGTGTCTTGGAAGGTGATGTTTCTCTTGACGATCTTGACGAGGGAGTCAGGCCGGGGCATAGTACTGTGTATGGCTCAATAGGAAGTTCTGACTATGGCTCCAACCAATATAGTGAAGACATGAAGAAATTTCGAAAAATGGCCTTAGGCAGTCAGGAACATGGTAGTGACTACAGTGGCGCTACCAGTGAATATGGGCCAAATCAATCTGTTTCTAGTAGTGAATATCTACAAAGTAAGGAAATAGGGTCCAGTGTTGGCAGGTCACAAGTCCCTAGGACTGTTGGGCATTACAGAACTCCTTCTTCAGGGACGAGCCAAGAGTATGTCCCTAGGAAACACACGGACAGAGATTTTCCTTCAGTGTTTAGAGATTTGTAGTGGCTTTGCAATTGTTTGCTATTGTGAAATATTACTTAATCTGTTTATTCTTTTGGAATGTGCATTTATTAAGAAATGCACCCTCGATACTTGGAATCCATGCATTCTTCTCTCCTCTCCTCTACAGCTTGTTTTATTTGGGGAAGCTGCTTGTTTCTCTAACAAGTATTATTATCAAAGAATCATAAATGTATCTTGCAGAGCAGCAAGCTAATTACTATTTTTTCAAACTAGTGCTTGACACTTTTTTCTTGTTC

Ace file of the UniGene sp_v1.1_unigene21405

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RKQ3_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	receptor protein kinase perk1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	84%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	84%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	84%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	84%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	84%
Blast2go	Protein kinase-like domain	IPR011009	-	84%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	84%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: your sequence is shorter than subject: 593 - 656

Fln protein: RRDLGCHSTTHSSSSPPPPPKTSSGSNTPSSTGTNNSSSSSSFSTTAIVGVAVAGVVGVLLLCILIACCCRKKRKRRPEFIPGQYYGAPPQPSKDDYYGGRPQYWQNNAPQPGDNAVKIRPPSSPPSHPVIPKPPPSLPDVMPPPPPPPPVFSSGDDSSSGFSGSKQPLPPPSPGIGLGISRTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPTMDWPTRLKIATGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEGFTHVSTRVMGTFGYLAPEYASTGKLTDKSDVFSFGVMLLELITGRRPVDTTPSFSEDSLVDWARPLLARAMEDGNVDALADIRIQHNYNANEMMRVVACAASCVRHSARKRPRMGQIVRVLEGDVSLDDLDEGVRPGHSTVYGSIGSSDYGSNQYSEDMKKFRKMALGSQEHGSDYSGATSEYGPNQSVSSSEYLQSKEIGSSVGRSQVPRTVGHYRTPSSGTSQEYVPRKHTDRDFPSVFRDL*

Protein Length: 594

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCACCCACTCGTCCTCCTCTCCACCACCACCACCGAAGACATCAAGTGGATCTAATACACCATCCTCTACAGGAACCAACAACAGCAGCAGCAGCAGCAGCTTTTCGACTACTGCCATTGTTGGCGTTGCTGTGGCCGGTGTCGTTGGAGTTCTTTTGCTTTGCATACTCATAGCGTGTTGCTGCAGGAAGAAGAGAAAGAGGAGGCCAGAGTTCATTCCTGGACAGTATTATGGAGCCCCACCTCAACCTTCCAAAGATGACTATTATGGAGGAAGACCTCAATACTGGCAAAATAATGCTCCTCAGCCAGGGGATAATGCTGTCAAGATTCGTCCACCTTCATCCCCCCCATCGCATCCTGTCATTCCTAAACCCCCACCATCACTTCCTGATGTCATGCCACCTCCCCCACCTCCCCCACCGGTATTTAGCAGTGGAGATGATTCAAGCTCTGGTTTTTCAGGATCAAAGCAGCCATTACCTCCTCCTTCTCCAGGAATTGGTCTTGGTATCTCAAGAACATTCACCTATGAAGATCTAGAGGCGGCTACAAATGGCTTCTCACGGACAAATCTATTAGGACAGGGGGGATTTGGATATGTATACAAAGGTATTCTTCCAGGAAGCAAAACTATAGCAGTGAAGCAGCTCAAAGTTGGTGGGAGCCAGGGAGAGCGTGAGTTTCAAGCAGAAGTGGAAATAATTAGTCGTGTGCATCATCGTCACCTTGTCTCATTGGTGGGTTACTGCATAGCTGGTAGCCAACGATTGCTTGTTTATGAGTTTGTTCCTAATGATACATTAGAGCACCATCTACATGGTAAAGGTCAGCCAACTATGGATTGGCCAACTAGATTGAAGATTGCAACAGGAGCAGCTCGTGGGCTTGCTTATTTACATGAAGACTGTTATCCGAAGATTATTCATAGAGACATCAAAGCTTCAAATATTCTTCTTGATTCCAACTTCGAAGCAAAGGTTGCAGACTTTGGCCTTGCAAAACTTGCTTCAGAAGGTTTTACTCATGTCTCCACAAGGGTTATGGGCACTTTTGGGTATTTGGCACCAGAATATGCATCAACTGGAAAATTGACAGATAAATCTGATGTTTTCTCATTTGGTGTTATGCTGCTTGAGTTGATCACTGGGCGCCGGCCTGTAGATACAACTCCATCATTTTCAGAAGACAGTCTAGTGGATTGGGCCCGACCCTTGCTTGCTCGAGCAATGGAAGACGGCAATGTAGATGCCCTTGCTGATATCCGGATACAGCACAACTATAACGCGAATGAGATGATGCGGGTAGTTGCATGTGCAGCTTCTTGTGTTCGACATTCTGCAAGAAAGCGCCCTCGTATGGGACAGATAGTACGTGTCTTGGAAGGTGATGTTTCTCTTGACGATCTTGACGAGGGAGTCAGGCCGGGGCATAGTACTGTGTATGGCTCAATAGGAAGTTCTGACTATGGCTCCAACCAATATAGTGAAGACATGAAGAAATTTCGAAAAATGGCCTTAGGCAGTCAGGAACATGGTAGTGACTACAGTGGCGCTACCAGTGAATATGGGCCAAATCAATCTGTTTCTAGTAGTGAATATCTACAAAGTAAGGAAATAGGGTCCAGTGTTGGCAGGTCACAAGTCCCTAGGACTGTTGGGCATTACAGAACTCCTTCTTCAGGGACGAGCCAAGAGTATGTCCCTAGGAAACACACGGACAGAGATTTTCCTTCAGTGTTTAGAGATTTGTAG___TGGCTTTGCAATTGTTTGCTATTGTGAAATATTACTTAATCTGTTTATTCTTTTGGAATGTGCATTTATTAAGAAATGCACCCTCGATACTTGGAATCCATGCATTCTTCTCTCCTCTCCTCTACAGCTTGTTTTATTTGGGGAAGCTGCTTGTTTCTCTAACAAGTATTATTATCAAAGAATCATAAATGTATCTTGCAGAGCAGCAAGCTAATTACTATTTTTTCAAACTAGTGCTTGACACTTTTTTCTTGTTC

Fln Alignment:

sp_v1.1_unigene21405___RKKRKRRPEFIPGQYYGAPPQPSKDDYYGGRPQYWQNNAPQPGDNAVKI
C0PRI9_______________RKKKKRRPEFTPGQYYGNPPHPPKDDYYGGRPQYY--NAPRPGDNAIKI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1487	75	25			0.996473
1488		25	75		0.996473
1497	75	25			0.996473
1514	80	20			0.995493
1517		16	83		0.994512
1518	83		16		0.994512
1519	83			16	0.994512
1524	87	12			0.992554
1528	75	12	12		0.975346
1529	87			12	0.992554
1531	87			12	0.992554
1532	87	12			0.992554
1534		12		87	0.992554
1753	68	31			1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
46	59	CCA CCA CCA CCA CC	14
108	126	CAG CAG CAG CAG CAG CAG C	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain