SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21403

Length: 351 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene21403
CGTCGTGACCTTGGCTGTCACTCAATAAGCTTAGTTGGTTCAAACAACGGGTTGTTGGTACATTATATACTCACCACCAGAAACTTGTTATTGTTGATACCCAAGCTGCTGGTAATGACCGAAGACTTGCCTCCTTTATAGGTGGGCTAGATCTCTGTGATGGTCGTTATGATACCCCAGAGCATTCTTTGTTTAGGACTCTTAAGACTGTACATAGAGATGATTTTCACAATCCTACTTTGATGGGAACAGTTGATTCTGGTGGCCCAAGAGAACCCTGGCATGATTTGCACTGTAAAATAGAAGGTCCTGCTGCATATGATATCCTTAAAAATTTTGAACAACGCTGGC

Ace file of the UniGene sp_v1.1_unigene21403 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase d delta, putative (EC:3.1.4.4)	-	-	5.04467e-44	71%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	phospholipase d	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 407 aas, your sequence is shorter than subject: 116 - 861

Fln protein: S*PWLSLNKLSWFKQRVVGTLYTHHQKLVIVDTQAAGNDRRLASFIGGLDLCDGRYDTPEHSLFRTLKTVHRDDFHNPTLMGTVDSGGPREPWHDLHCKIEGPAAYDILKNFEQRW

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAGCTTAGTTGGTTCAAACAACGGGTTGTTGGTACATTATATACTCACCACCAGAAACTTGTTATTGTTGATACCCAAGCTGCTGGTAATGACCGAAGACTTGCCTCCTTTATAGGTGGGCTAGATCTCTGTGATGGTCGTTATGATACCCCAGAGCATTCTTTGTTTAGGACTCTTAAGACTGTACATAGAGATGATTTTCACAATCCTACTTTGATGGGAACAGTTGATTCTGGTGGCCCAAGAGAACCCTGGCATGATTTGCACTGTAAAATAGAAGGTCCTGCTGCATATGATATCCTTAAAAATTTTGAACAACGCTGGC

Fln Alignment:

sp_v1.1_unigene21403___PWLSLNKLSWFKQRVVGTLYTHHQKLVIVDTQAAGNDRRLASFIGGLDLCDGRYDTPEHSLFRTLKTVHRDDFHNPTLMGTVDSGGPREPWHDLHCKIEGPAAYDILKNFEQRW
B8LQ49_______________PRYASTKLSWFKQQVVGTLYTHHQKNVIVDSQAQGNYRKLTAFIGGLDLCDGRYDTPEHRLFKGLETVYEEDYHNPTFTTNADAHGPRQPWHDLHSKIEGPAAYDILTNFEQRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain