SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21395

Length: 2686 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21395
CGTCGTGACCTTGGCTGTCACTCAAGGGTTGCTGCAAAACAAGAGGATTGTGAGTATATAAAACAAACGAGTACCGCAGGCAAGTAGGCATGGAGAATGAATATTGCAGACAAGTAGTGATGGAGAATGAATATACTCAGAACTCACATGATATATCGTCAAGCAGCAGAAACGATGGAGGTGAGGAACATATATATTCTTGGAATGCAGTGGAAGATCCGGTGAGAGCCACTGAGAACACTGAGAACGAAGAGCAGATTCGTACAAGAGAAGACTCCGATGACCAGTCTCCGATCCAGGAGGTGGCTCTCACTGTGCCTACAACAGACGATCCAGCCATTCCAGTACTAACTTTCAGGATGTGGGTTCTCGGAATTCTGTCTTGCGTTCTACTCTCGTTTCTAAATCAGTTCTTTTGGTACAGAAGGGAACCCCTCTCCATTAGTTCAGTCGCTGCTCAGATTGCAGTCCTCCCTCTCGGCCGGTTAATGGCAGCATCCATAACGAAGAAAAAGTTCTTTGCAGGGAGCAAATGGGAGTTCTCGCTGAATCCGGGGCCGTTCAATATGAAGGAGCACGTTCTCATAACCATCTTTGCGAATGCTGGGGCAGGAACTGTATATGCAATTCACATTGTCAGTGCTGTCAAAATTTTCTACAAGAAGAACATGAGCTTTTTCGTTTCTTTACTCGTTTGCATGACAACCCAGATATTGGGTTTGGATGGGCGGGGGTCTTTAGAAAATATCTAGTGGAGCCTGCTGTTGTGTGTTGGCTGTCACTCATTGTTCAGGTTTCTCTGTTCAGAGCTCTTCATGAGAAGGAGGAGAGGCCCAAAGGAGGCCTTACACGAAACCAGTTTTTCATGATAGCCCTTTCATGTAGTTTTGCCTATTATCTATTCCCTGGCTATCTGTTTCCCATGGTGACATCGCTGTCATGGATCTGCTGGATCTTTCCAAAGTCTGTCCTTGCACAACAATTGGGTTCAGGATTAAATGGCCTTGGCATCGGTGTCATAGCAATAGATTGGTCCACCATTTCTTCTTACCTGGGAAGTCCTCTTGCCAGTCCTTGGTTTGCAATAGCCAATGTGGGAGTCGGATTTGTGCTTGTAATGTATGTGATAACTCCATTAGCATACTGGCTCAACTTTTATGATGCAAAAACATTCCCCATCTTTTCTGAAAGCCTCTTCACCTCCAGTGGCCAAATTTACAACATCTCCCAAATCGTTGATTCAAACTTCCATCTCGACCTCAAAGCTTATGAGGACTTGGGAACATTGCATCTTAGTACTTTCTTTGCTGTTACTTATGGCGTTGGGTTCGCTGCGTTAACTGCCACAGTGGTTCACGTCCTCCTTTTTCATGGAAAGGAAATTTGGCATCTCAGCTTGTCTGCTTTCAGAGATCAGAAAGTAGATGTGCACACCAGACTCATGAGAAAGTACAAGCAAGTGCCAGAATTATGGTTCACTGGAATTCTCGTCGGCACTGTAGCTTTAACTCTTTTTGCATGCGAATATTACAATGAACAACTCCAATTGCCATGGTGGGGAGTAATATTGGCATGTGGCATTTCCTTCTTCTTCACATTACCCATTGGCGTTATTACTGCAACTACCAATCAGACGCCGGGTCTGAACATCATCACGGAGTACATGATTGGTTATACTTATCCAGGCAGGCCAGTTGCAAACGTTTGCTTCAAAACGTACGGATATATAAGCATGGTCCAAGCCCTGTCATTCTTGGGGGATTTTAAGCTGGGACATTATATGAAAATCCCTCCTAGATCAATGTTCTATGCACAGATTGTGGGCACAGTAATTTCAGGGATTGTGTACTTAGGCACAGCGTGGTGGCTCATATATTCCATTCCCAATATCTGCGACACTGCTCTATTGCCCGCTAATAGCCCATGGACTTGTCCAATGGATCGCGTATTCTACGACGCTTCTGTAATATGGGGATTAATTGGACCCAGAAGGATTTTTGGAAATCTTGGTGAATATACAGCAATCAACTGGTTTTTCTTAGGAGGAGCAATAGCTCCAGTTATAGTATGGCTGTTTCACAAGGCATACCCTGAGAAAGAATGGATCAGGCTGATCAATATGCCTATTCTCATCGGAGCAACGGGGATGATGCCTCCTGCTACAGCAGTGAATTATACAAGCTGGATACTTCTTGGATTCATCTTCAGCTTTGTACTGTACAGATATAAGAAAGATTGGTGGCAGCGTCACAACTATGTGCTCTCTGGAGCATTGGACGCAGGATTGGCATTCATGGGAGTTCTGCTCTACTTGTTCTTGGGATATGAAAATATTTCATTGAATTGGTGGGGAGCAAACGTAGACGGTTGCTCCTTGGCATCGTGCCCCACAGCTAAAGGTATTGTCGTGGATGGCTGCCCTATGTTTTCGTGACATAGCCGAGGCTTTCCAGTTACTGAAGTTTCCGTTGGAGGTGTGTTTGGTGGCAGATGTTGTTTCTTTTCCAATTACATGTTCTGTTCTGATAGATTCTACTCACCAGAAGGGACTAGTCTCCAAGCCGATTTCTTTTGTTTATTTCCTTCTGTGCATGGAAAGGAGCTTTGAATGCCATGGAAACTGGGGAGATATTACATTTTGTTTTATATATATATAAATATAATATAGCTTTTAAATTTTAAACGT

Ace file of the UniGene sp_v1.1_unigene21395

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter 9 n=1 Tax=Zea mays RepID=B6SVF4_MAIZE	-	-	74%
FL-Next	sp=Oligopeptide transporter 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	oligopeptide transporter opt family	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	0.0	86%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	0.0	86%
Blast2go	Oligopeptide transporter OPT superfamily	IPR004813	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O82485

Fln msg: Overlapping hits, possible frame ERROR between 734 and 713,

Fln protein: MENEYCRQVVMENEYTQNSHDISSSSRNDGGEEHIYSWNAVEDPVRATENTENEEQIRTREDSDDQSPIQEVALTVPTTDDPAIPVLTFRMWVLGILSCVLLSFLNQFFWYRREPLSISSVAAQIAVLPLGRLMAASITKKKFFAGSKWEFSLNPGPFNMKEHVLITIFANAGAGTVYAIHIVSAVKIFYKKNMSFFVSLLVCMTTQxxxxxxxxxFRKYLVEPAVVCWLSLIVQVSLFRALHEKEERPKGGLTRNQFFMIALSCSFAYYLFPGYLFPMVTSLSWICWIFPKSVLAQQLGSGLNGLGIGVIAIDWSTISSYLGSPLASPWFAIANVGVGFVLVMYVITPLAYWLNFYDAKTFPIFSESLFTSSGQIYNISQIVDSNFHLDLKAYEDLGTLHLSTFFAVTYGVGFAALTATVVHVLLFHGKEIWHLSLSAFRDQKVDVHTRLMRKYKQVPELWFTGILVGTVALTLFACEYYNEQLQLPWWGVILACGISFFFTLPIGVITATTNQTPGLNIITEYMIGYTYPGRPVANVCFKTYGYISMVQALSFLGDFKLGHYMKIPPRSMFYAQIVGTVISGIVYLGTAWWLIYSIPNICDTALLPANSPWTCPMDRVFYDASVIWGLIGPRRIFGNLGEYTAINWFFLGGAIAPVIVWLFHKAYPEKEWIRLINMPILIGATGMMPPATAVNYTSWILLGFIFSFVLYRYKKDWWQRHNYVLSGALDAGLAFMGVLLYLFLGYENISLNWWGANVDGCSLASCPTAKGIVVDGCPMFS*

Protein Length: 783

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGTTGCTGCAAAACAAGAGGATTGTGAGTATATAAAACAAACGAGTACCGCAGGCAAGTAGGC_-_ATGGAGAATGAATATTGCAGACAAGTAGTGATGGAGAATGAATATACTCAGAACTCACATGATATATCGTCAAGCAGCAGAAACGATGGAGGTGAGGAACATATATATTCTTGGAATGCAGTGGAAGATCCGGTGAGAGCCACTGAGAACACTGAGAACGAAGAGCAGATTCGTACAAGAGAAGACTCCGATGACCAGTCTCCGATCCAGGAGGTGGCTCTCACTGTGCCTACAACAGACGATCCAGCCATTCCAGTACTAACTTTCAGGATGTGGGTTCTCGGAATTCTGTCTTGCGTTCTACTCTCGTTTCTAAATCAGTTCTTTTGGTACAGAAGGGAACCCCTCTCCATTAGTTCAGTCGCTGCTCAGATTGCAGTCCTCCCTCTCGGCCGGTTAATGGCAGCATCCATAACGAAGAAAAAGTTCTTTGCAGGGAGCAAATGGGAGTTCTCGCTGAATCCGGGGCCGTTCAATATGAAGGAGCACGTTCTCATAACCATCTTTGCGAATGCTGGGGCAGGAACTGTATATGCAATTCACATTGTCAGTGCTGTCAAAATTTTCTACAAGAAGAACATGAGCTTTTTCGTTTCTTTACTCGTTTGCATGACAACCCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTAGAAAATATCTAGTGGAGCCTGCTGTTGTGTGTTGGCTGTCACTCATTGTTCAGGTTTCTCTGTTCAGAGCTCTTCATGAGAAGGAGGAGAGGCCCAAAGGAGGCCTTACACGAAACCAGTTTTTCATGATAGCCCTTTCATGTAGTTTTGCCTATTATCTATTCCCTGGCTATCTGTTTCCCATGGTGACATCGCTGTCATGGATCTGCTGGATCTTTCCAAAGTCTGTCCTTGCACAACAATTGGGTTCAGGATTAAATGGCCTTGGCATCGGTGTCATAGCAATAGATTGGTCCACCATTTCTTCTTACCTGGGAAGTCCTCTTGCCAGTCCTTGGTTTGCAATAGCCAATGTGGGAGTCGGATTTGTGCTTGTAATGTATGTGATAACTCCATTAGCATACTGGCTCAACTTTTATGATGCAAAAACATTCCCCATCTTTTCTGAAAGCCTCTTCACCTCCAGTGGCCAAATTTACAACATCTCCCAAATCGTTGATTCAAACTTCCATCTCGACCTCAAAGCTTATGAGGACTTGGGAACATTGCATCTTAGTACTTTCTTTGCTGTTACTTATGGCGTTGGGTTCGCTGCGTTAACTGCCACAGTGGTTCACGTCCTCCTTTTTCATGGAAAGGAAATTTGGCATCTCAGCTTGTCTGCTTTCAGAGATCAGAAAGTAGATGTGCACACCAGACTCATGAGAAAGTACAAGCAAGTGCCAGAATTATGGTTCACTGGAATTCTCGTCGGCACTGTAGCTTTAACTCTTTTTGCATGCGAATATTACAATGAACAACTCCAATTGCCATGGTGGGGAGTAATATTGGCATGTGGCATTTCCTTCTTCTTCACATTACCCATTGGCGTTATTACTGCAACTACCAATCAGACGCCGGGTCTGAACATCATCACGGAGTACATGATTGGTTATACTTATCCAGGCAGGCCAGTTGCAAACGTTTGCTTCAAAACGTACGGATATATAAGCATGGTCCAAGCCCTGTCATTCTTGGGGGATTTTAAGCTGGGACATTATATGAAAATCCCTCCTAGATCAATGTTCTATGCACAGATTGTGGGCACAGTAATTTCAGGGATTGTGTACTTAGGCACAGCGTGGTGGCTCATATATTCCATTCCCAATATCTGCGACACTGCTCTATTGCCCGCTAATAGCCCATGGACTTGTCCAATGGATCGCGTATTCTACGACGCTTCTGTAATATGGGGATTAATTGGACCCAGAAGGATTTTTGGAAATCTTGGTGAATATACAGCAATCAACTGGTTTTTCTTAGGAGGAGCAATAGCTCCAGTTATAGTATGGCTGTTTCACAAGGCATACCCTGAGAAAGAATGGATCAGGCTGATCAATATGCCTATTCTCATCGGAGCAACGGGGATGATGCCTCCTGCTACAGCAGTGAATTATACAAGCTGGATACTTCTTGGATTCATCTTCAGCTTTGTACTGTACAGATATAAGAAAGATTGGTGGCAGCGTCACAACTATGTGCTCTCTGGAGCATTGGACGCAGGATTGGCATTCATGGGAGTTCTGCTCTACTTGTTCTTGGGATATGAAAATATTTCATTGAATTGGTGGGGAGCAAACGTAGACGGTTGCTCCTTGGCATCGTGCCCCACAGCTAAAGGTATTGTCGTGGATGGCTGCCCTATGTTTTCGTGA___CATAGCCGAGGCTTTCCAGTTACTGAAGTTTCCGTTGGAGGTGTGTTTGGTGGCAGATGTTGTTTCTTTTCCAATTACATGTTCTGTTCTGATAGATTCTACTCACCAGAAGGGACTAGTCTCCAAGCCGATTTCTTTTGTTTATTTCCTTCTGTGCATGGAAAGGAGCTTTGAATGCCATGGAAACTGGGGAGATATTACATTTTGTTTTATATATATATAAATATAATATAGCTTTTAAATTTTAAACGT

Fln Alignment:

sp_v1.1_unigene21395___EYTQNSHDISSSSRNDGGEEHIYSWNAVEDPVRATENTENEEQIRTREDSDDQSPIQEVALTVPTTDDPAIPVLTFRMWVLGILSCVLLSFLNQFFWYRREPLSISSVAAQIAVLPLGRLMAASITKKKFFAGSKWEFSLNPGPFNMKEHVLITIFANAGAGTVYAIHIVSAVKIFYKKNMSFFVSLLVCMTTQIxxxxxxxVFRKYLVEPAVVCWLSLIVQVSLFRALHEKEERPKGGLTRNQFFMIALSCSFAYYLFPGYLFPMVTSLSWICWIFPKSVLAQQLGSGLNGLGIGVIAIDWSTISSYLGSPLASPWFAIANVGVGFVLVMYVITPLAYWLNFYDAKTFPIFSESLFTSSGQIYNISQIVDSNFHLDLKAYEDLGTLHLSTFFAVTYGVGFAALTATVVHVLLFHGKEIWHLSLSAFRDQKVDVHTRLMRKYKQVPELWFTGILVGTVALTLFACEYYNEQLQLPWWGVILACGISFFFTLPIGVITATTNQTPGLNIITEYMIGYTYPGRPVANVCFKTYGYISMVQALSFLGDFKLGHYMKIPPRSMFYAQIVGTVISGIVYLGTAWWLIYSIPNICDTALLPANSPWTCPMDRVFYDASVIWGLIGPRRIFGNLGEYTAINWFFLGGAIAPVIVWLFHKAYPEKEWIRLINMPILIGATGMMPPATAVNYTSWILLGFIFSFVLYRYKKDWWQRHNYVLSGALDAGLAFMGVLLYLFLGYENISLNWWGANVDGCSLASCPTAKGIVVDGCPMFS
O82485_______________DLTNPSYASSSSSSSEPRDE-------TEDLLLPISD-ENEEE------EEENSPIRQVALTVPTTDDPSLPVLTFRMWVLGTLSCILLSFLNQFFWYRTEPLTISAISAQIAVVPLGRLMAAKITDRVFFQGSKWQFTLNPGPFNVKEHVLITIFANAGAGSVYAIHVVTVVKAFYMKNITFFVSFIVIVTTQVxxxxxxxIFRKYLVEPAAMWWPANLVQVSLFRALHEKEERTKGGLTRTQFFVIAFVCSFAYYVFPGYLFQIMTSLSWVCWFFPSSVMAQQIGSGLHGLGVGAIGLDWSTISSYLGSPLASPWFATANVGVGFVLVIYVLVPICYWLDVYKAKTFPIFSSSLFSSQGSKYNITSIIDSNFHLDLPAYERQGPLYLCTFFAISYGVGFAALSATIMHVALFHGREIWEQSKESFKEKKLDVHARLMQRYKQVPEWWFWCILVTNVGATIFACEYYNDQLQLPWWGVLLACTVAIIFTLPIGIITAITNQAPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMQQAITFLQDFKLGHYMKIPPRTMFMAQIVGTLISCFVYLTTAWWLMETIPNICDSV---TNSVWTCPSDKVFYDASVIWGLIGPRRIFGDLGLYKSVNWFFLVGAIAPILVWLASRMFPRQEWIKLINMPVLISATSSMPPATAVNYTTWVLAGFLSGFVVFRYRPNLWQRYNYVLSGALDAGLAFMGVLLYMCLGLENVSLDWWGNELDGCPLASCPTAPGIIVEGCPLYT

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
344	20		80		0.995493
352	80		20		0.995493
355	80	20			0.995493
464		20	80		0.995493
465		80	20		0.995493
467		80	20		0.995493
469		20	80		0.995493
470	80	20			0.995493
475	80			20	0.995493
482	20	80			0.995493
613	22		11	66	0.999999
656	87			12	0.992554
774		50		50	1.0
776		50		50	1.0
777		50		50	1.0
778	50		50		1.0
782		50		50	1.0
783		50	50		1.0
784			50	50	1.0
789		40		60	1.0
790			60	40	1.0
794	40	60			1.0
795	40			60	1.0
797	60	40			1.0
949			75	25	0.996473
986			83	16	0.994512
1193	40	60			1.0
1222			88	11	0.923564
1269		88		11	0.923564
1592		20		80	0.995493
1928		33	66		0.997452
1994	66		33		0.997452
2006	66		33		0.997452
2055	33			66	0.997452
2083			33	66	0.997452
2180	87	12			0.992554
2182		87		12	0.992554
2183	87	12			0.992554
2188	87	12			0.992554
2189		12		87	0.992554
2191	87			12	0.992554
2192			12	87	0.992554
2193	87		12		0.992554
2195	87			12	0.992554
2196	87		12		0.992554
2197			87	12	0.992554
2199		12		87	0.992554
2200			87	12	0.992554
2201		12	87		0.992554
2217	88		11		0.923564
2220			11	88	0.923564
2222		87	12		0.992554
2226		11		88	0.923564
2231	88		11		0.923564
2238	88			11	0.923564
2239		11	88		0.923564
2287		88	11		0.923564
2483	13	81		4	1.0
2484	13	86			1.0
2528	88	11			0.999952

SSRs (tot: 1)

Start position	End position	Sequence	Length
2645	2656	TA TA TA TA TA TA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain