SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21313

Length: 1102 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl hydrolase family 38 protein; K01191 alpha-mannosidase [EC:3.2.1.24]	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	60%
Blast2go	glycosyl hydrolase family 38 protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	54%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Other glycan degradation	00511		0.0	54%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	66%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	66%
Blast2go	vacuole	GO:0005773	Cellular Component	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%
Blast2go	apoplast	GO:0048046	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 38, core	IPR000602	-	66%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	66%
Blast2go	Glycoside hydrolase/deacetylase, beta/alpha-barrel	IPR011330	-	66%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	66%
Blast2go	Glycoside hydrolase, family 38, central domain	IPR015341	-	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SWM3

Fln msg: Distance to subject end: 505 aas, your sequence is shorter than subject: 367 - 992

Fln protein: RRDLGCHSFEALFFARADYQDVVTLGVARTMEMIWRGSKSLGSSAQVFTGILAHHYDPPSEFRYDIKTTETTIQDDPFLYDYNVEQQIDRFVQLAEEQAKQFRTNHIMWTMGEDFAYENANTWFKQMDKLIHYANKDGRVNAFYSTPSIYTTEKYAANESWPLKTDDFFPYADCEHCYWTGYFTSRPALKGYVRKLSGVLQATRQLEFLVGRNEGKPNTDSLEEAMAILQHHDGVSGTERQHVADDYAVRLSRASIEAEDVMKSALVYLMSGNQNCEDTISTVVKTNAKRHKAYLLEEMDSPNTSQYIRKGIELEQCSLMNISYCPKSESELGVGKSLVVVIYNPLGWIRQEFVKIPVSSSALEVLD

Protein Length: 368

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGAAGCATTGTTCTTTGCGAGGGCTGACTATCAAGACGTTGTGACCTTGGGTGTCGCTCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGACCCTCCCTCTGAATTTCGATATGACATTAAAACTACAGAAACAACTATCCAGGACGATCCGTTTCTTTATGATTATAATGTTGAGCAACAGATTGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAACAATTTCGTACAAATCATATCATGTGGACAATGGGGGAAGATTTTGCATATGAAAATGCAAATACATGGTTCAAGCAGATGGATAAACTCATACATTACGCAAATAAGGATGGGCGCGTCAATGCATTTTATTCAACTCCATCTATCTACACTACTGAAAAATATGCAGCCAATGAGAGTTGGCCTCTGAAGACAGATGACTTTTTCCCGTATGCAGACTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCCGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGCACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACGTGCTTCTATAGAGGCTGAGGATGTAATGAAGTCAGCATTAGTATACCTAATGAGTGGTAACCAAAATTGTGAAGATACAATTTCCACTGTTGTCAAAACTAATGCAAAGCGACATAAAGCATATTTATTGGAAGAGATGGACTCTCCAAATACTTCACAATATATAAGAAAGGGAATCGAGCTTGAACAGTGCTCTCTAATGAACATCAGCTACTGCCCCAAATCTGAAAGCGAGCTAGGAGTCGGAAAGAGTCTGGTGGTTGTTATATATAACCCCTTGGGATGGATACGCCAGGAATTTGTTAAGATCCCGGTATCAAGTTCAGCTTTGGAAGTTCTGGATT

Fln Alignment:

sp_v1.1_unigene21313___FEALFFARADYQDVVTLGVARTMEMIWRGSKSLGSSAQVFTGILAHHYDPPSEFRYDIKTTETTIQDDPFLYDYNVEQQIDRFVQLAEEQAKQFRTNHIMWTMGEDFAYENANTWFKQMDKLIHYANKDGRVNAFYSTPSIYTTEKYAANESWPLKTDDFFPYADCEHCYWTGYFTSRPALKGYVRKLSGVLQATRQLEFLVGRNEGKPNTDSLEEAMAILQHHDGVSGTERQHVADDYAVRLSRASIEAEDVMKSALVYLMSGNQNCEDTISTVVKTNAKRHKAYLLEEMDSPNTSQYIRKGIELEQCSLMNISYCPKSESELGVGKSLVVVIYNPLGWIRQEFVKIPVSSSALEVLD
A9SWM3_______________FDAFFFARADYQDIIKRRKERTMEVIWQGSKSLGASAQIFAGLLWHHYEPPHEFQFDISSTTSPIQDDPALFGYNVPKLVDLFVEYATNQSKEYRTNHVMWPMGDDFAYENANTWYKQIDKLIHYVNKDGRVSAFYSTPSIYLDAVHAANATWHLKTDDYFPYSDCPHCFWTGYFTSRPALKGYVRKLSALLQAARQVEFLVGKNSTGPNTDSLEEAVAILQHHDGVSGTEQQHVANDYAARLAAGESEAEMVFNKALASLISTNA----TVSTSL-----------------------------VEECNLLNVSYCPPTEVELKPGKSFVVVTYNPLGWEREDFVRVPVSSSKIEVID

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
113		85	14		0.993533
114			28	71	1.0
115	71	14		14	0.984337
116	71	14		14	0.984337
119		85	14		0.993533
122		14		85	0.993533
123		14		85	0.993533
124	14		71	14	0.984337
130			14	85	0.993533
137	85			14	0.993533
138		14	85		0.993533
139	14		85		0.993533
194	87			12	0.992554
199	87	12			0.992554
200	87		12		0.992554
203	12	87			0.992554
205	87			12	0.992554
472	88		11		0.923564
473	88			11	0.923564
474		11		88	0.923564
476	87			12	0.992554
479		12	87		0.992554
487		87	12		0.992554
489		12	87		0.992554
491	87	12			0.992554
492			87	12	0.992554
493	87	12			0.992554
494	12	87			0.992554
591		75		25	0.996473
635			71	28	1.0
636	71		28		1.0
637	71		28		1.0
638	71		28		1.0
727	11		88		0.923564
728			11	88	0.923564
730		11	88		0.923564
860	66	33			1.0
861	66		33		1.0
866	66	33			1.0
867	66	33			1.0
868			66	33	1.0
869		66		33	1.0
871	66		33		1.0
873	66			33	1.0
876	66	33			1.0
878	66	33			1.0
879			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain