SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21309

Length: 1784 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21309

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	eukaryotic translation initiation factor 4g, putative; K03260 translation initiation factor eIF-4F	-	-	5.0e-11	35%
FL-Next	Isoform 2 of Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G	-	-	0.0	28%
Blast2go	eukaryotic translation initiation factor	-	-	6.0678e-20	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q76E23-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1055 aas, your sequence is shorter than subject: 290 - 1725

Fln protein: VVTLAVTHSSSGLPSASLPPTSRGTTRPNTLGDQPRESSDKSSASNSKIQNGSNADSHHGLPLTPDASEEVSRAVYEQSFAFQFGSISPGFVNGLQIPARTSSAPPNLDEQNRHQARYDSTNAASLNRLPIVSAEPQAHRQNQILESQVQGRRYLHDGGGHPISLAQQHPTSGGTSPVLFQQTQSPPIAVQMQYPAPSSQQLLGTPPRPPPTLPSPALRSQQVLMQQGQRLNVQSHILPPSLHGMPQHSNPSGHSVFIATTTTGSPSSGYSNESSHGDQATKRDFWYTV*

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCTTCTGGCTTGCCTTCAGCTTCCTTACCTCCAACCAGTCGAGGCACTACTAGGCCAAATACTCTTGGGGACCAGCCAAGGGAGAGTTCAGACAAAAGTTCTGCCAGCAATAGTAAAATTCAAAATGGCAGTAATGCTGACAGCCATCATGGGTTGCCATTGACACCAGATGCTTCTGAGGAGGTTTCTAGAGCTGTATATGAACAATCATTTGCATTTCAGTTTGGCAGCATAAGTCCTGGGTTTGTAAATGGCTTGCAGATACCTGCTCGAACTAGCTCAGCACCTCCCAACCTTGATGAGCAGAATCGTCACCAGGCACGATATGACTCTACAAATGCTGCTTCTCTCAATAGACTGCCTATTGTTTCAGCTGAACCACAAGCACATCGCCAAAATCAAATACTGGAGTCTCAAGTTCAAGGGAGGAGATATTTACATGATGGTGGTGGACATCCAATATCTCTGGCACAGCAGCACCCTACTTCTGGTGGCACAAGTCCTGTATTGTTTCAGCAGACCCAGTCTCCACCTATTGCAGTTCAGATGCAATACCCAGCACCAAGTTCACAACAATTGTTGGGTACTCCTCCGCGACCACCACCAACATTACCATCACCTGCCTTGCGTTCACAGCAAGTGCTGATGCAACAAGGGCAGCGTTTGAATGTTCAATCACATATACTGCCACCTTCACTACATGGTATGCCTCAACATAGTAACCCCAGCGGTCACTCAGTTTTCATCGCAACAACTACCACAGGTAGCCCATCATCTGGGTACTCAAATGAGTCTTCCCATGGGGACCAAGCTACCAAGCGGGATTTCTGGTACACAGTTTAGGTCTCCAGTGATGAATCACCATATTCCTGCCCGTACCAATAAGGCGGTGAAGATTACTCATCCAGAGACTCATGAAGAGCTGAGGTTTGATTCCAGTGGTAAGAAATCTGAGTCGGATAATGCTGCCACAACTTCTCTTTCAGGATCTGTTTCCTTGTCAGTGAGAACGGCAACAAATGGTTCTATTCTCTCACGTCCTCCAGGTGTTTCACACGCTACGAATTTTTACCATGTACAGACAGGATCGTATGGTCATCCTTCACCTACTTTTTACCCGCATCCAAGAAATTCAGTTCCACCCCAAAGATCTAATTCTGTACATCAATCACCAGCACAAATTGTTTCCTCTGGGATGGATGCACAGTCCATTGTTCCCAAGCTTGAAACTTCCGGGGCTTCTAGCACTGAGCTTTCACAGCCTATTGTTCATGATGGTGCTGCAGTTCCAGTTTCTCTGACAAGGGGTCATGGCATAACACAAACTCGCCTTACATCAACTTCAGAAAAGGATATGTCTGTTACATTATCCTCTACTCAGACTCAAGATACTCTATTTGCTAAGCAATGCAACTGACATGCCCCAAAGTAAATCACTGGATTCATCAGAACAGCTTTTCACTCCAGCTGATAGTGTTTCTTTGGAAGTTCATAATGTTGAACCTTTGGGTTCATCTTCATCATCTGTAGCAAACGAGGTATCAGTCCAGAGCTGTGGTGTAACAAAACCTGTGGTGGTCTCAGCTACTGATGACATCAAACTCTCAATGACGTGCACGACTGTTTCAGCTCAGTCAGTGCCATTCGTTGATACGGTTTCGCCCTGTGCCACTGTTTCCGCTCAAAAACTGGGATCAAAAACCTCTGGCCATGAAAATCCTAAAGGTGATTCTGTTAAAGCATCAGGTTCAACAGC

Fln Alignment:

sp_v1.1_unigene21309___TPDASEEVSRAVYEQSFAFQFGSISPGFVNGLQIPARTSSAPPNLDEQNRHQARYDSTNAASLNRLPIVSAEPQAHRQNQILESQVQGRRYLHDGGGHPISLAQQH---PTSGGTSPVL---FQQTQSPPIAVQMQYP
Q76E23-2_____________TPNTAKVAASGDASQAFPLQFGSLGPD----LMVPARTTSAPPNMDDQKRAQMQQSSLRTAS----NVPASVPKKDSSNKGADNQLM-RKEGHNPSSEKADIQVPHIAPPSQTQKSPITNIRMPSVQTPYQHTQVPHP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1315		87		12	0.992554
1338	12		87		0.992554
1397	83			16	0.994512
1399		16		83	0.994512
1409		20		80	0.995493
1417	80	20			0.995493
1420	80			20	0.995493
1421			20	80	0.995493
1423		80	20		0.995493
1425		80	20		0.995493
1428		20		80	0.995493
1429	20			80	0.995493
1430			20	80	0.995493
1433		20		80	0.995493
1452		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain