SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21290

Length: 2489 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21290
CGTCGTGACCTTGGCTGTCACTCATTAAAGGTTTCCTTCACCCTAACTTTTTCGCTACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGAATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATCATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGAGGAGGAGGAGGAAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAAGAGAAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTAAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATACTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAAGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAGTCTCTGCAAAGTTATCAAGGATATTCTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAATTCAGTGTTTTATTAGCTTTTTGTTTAAATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATTTTTTTTCCGAGCTTTTTTGCCTTTAAAA

Ace file of the UniGene sp_v1.1_unigene21290

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco153543(105), HSP90-1; LOC100384473; K04079 molecular chaperone HtpG	-	-	85%
FL-Next	sp=Heat shock protein 81-1; Oryza sativa subsp. japonica (Rice).	-	-	90%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	94%
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	94%
Blast2go	Heat shock protein Hsp90, conserved site	IPR019805	-	94%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	94%
Blast2go	Heat shock protein Hsp90, N-terminal	IPR020575	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0J4P2

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 680 - 699

Fln protein: MAEAGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEVSDDEEEEEKEKKEEEGTVEEVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLKYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESxxxxKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATKEGLKLEESEDEKKKSLCKVIKDILVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD*

Protein Length: 681

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAAAGGTTTCCTTCACCCTAACTTTTTCGCTACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGAATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATC_-_ATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGAGGAGGAGGAGGAAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAAGAGAAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTAAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATACTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAAGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCxxxxxxxxxxxxAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAGTCTCTGCAAAGTTATCAAGGATATTCTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAA___TTCAGTGTTTTATTAGCTTTTTGTTTAAATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATTTTTTTTCCGAGCTTTTTTGCCTTTAAAA

Fln Alignment:

sp_v1.1_unigene21290___AGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLKYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAxxxxxxxEGWKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXX---------CKVIKDIL--------VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD
Q0J4P2_______________ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKE-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAxxxxxxxEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDET-AEADTDMPPLED--DAGESKMEEVD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
438		60	40		1.0
439	60		40		1.0
952	83		16		0.994512
1153	14		85		0.993533
1339		85		14	0.993533
2332			66	33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
1025	1038	GAG GAG GAG GAG GA	14
1101	1116	AGA AGA AGA AGA AGA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain