SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21267

Length: 2412 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21267
CGTCGTGACCTTGGCTGTCACTCAATAAGCTCCTACACCAAGGAAGGAGAAAGACAGAGAGAAGCAGGCAGCTGACAATCACCGGGGATTTCTTCTCAAGCCTCCTCGTCGGTCGAGAGTTCGATCCGCGTAAAAGGCCTGAATTGTCATTTTGCCATACGATCAATCAATCCAAGTTCTCTGCTTCTTTTTTTTTAAATCACGACATGGCTGCCACTACAGAGGCTGCTACTGTTCCTGTTCATGTTGCTGTGCCGGCCGAAGTTCCTGCAAATGTTCATGTTGCTGTGCCGGCCGAAGCTCCTGCAAATGTTCCTGTCGAAGCTCCTGCAACGGAAGCCGTGAAGGTTGAGGGCGAAGCGGTGAAAACGTCAGATGTAGAGGCAGGGGCTTCTGTTGCTGAGGAAGGAAACCAGGAGCTGCGTTCTTCGTTCAAGGAGGAGAGCAACTTTGTGTCCGATTTGAAGGAATCGGAGAAAAAGGCTTTGCAAGAGTTGAGGGTTCGAGTCGAGGAAGCTCTCAAAAATAATGAATTCGTTGAACCTCCTCCTGCTCCGCCCAAGTCCAAGAGCACTGAAGGCGAAAAGACCGAGGGCGTAAAGGAGGTTATCGAAGTTGAAGAAGAAAAGAAGACGATCTCCGAAACAGAAGTGAAAGCCGAAGCCGGAGATGCTTCAAAAGACAAAACTCCAGTTGAGGAAACGAAAAGCACCCCTGCGGCTCCAGTTACTGAAACTACTGAAACGCCTCCGCCAGTCGAAACCCCCGCCGGGGCGCAGGGTGAAGTCCCCGCCACCGAAACTGCGGCGGAGGTAACCGAGGCTGCTCCCCCTGCTCCCCCGGAAGACATCTACCTGTGGGGAGTCCCTTTGGCGCCCAGCAAGGGCGATGAGCGCACAGACGTCGTGTTATTGAAATTCCTCCGTGCCAGGGACTTTAAAGTTAGCGATGCCTTTACTATGCTCAAGAACACGGTCCTATGGAGAAAGAAATTCGGAGTGGACGGCATACTGGAAGAGGATTTGGGGCATGATTGGGATGGGGTCGCCTATATGCATGGCTATGATAAGGAAGGGCATCCCGTCTGCTACAATGTTTACGGCGTTTTCCAAGACAATGAGCTCTACCAGAAGACCTTTGGCGATGAAACCAAGCGCGAGAAGTTCCTGCGATGGAGGGTTCAGCTTCTTGAAAAGGGCATCCAGGAGCAACTCAGTTTCAGTCCCGGGGGCGTTAGCTCCATGGTCCAAATCACCGATCTCAAAAATTCGGCATCTACTCTCGGCAAAAAGGATCTCAAACAGGCTGCCAATCAGATCCTCACCCTCCTGCAAGATAATTACCCTGAGTTCGTTGCCAAAAAGATTTTTGTCAATGCCTCGTGGTGGTACTTGGCTTATTATACCATGATATCTCACTTTGTCTCTCCAAGAACCAGTAGCAAGTTTGTTGCTGCCCGCCCTACCAAGGTGTCGGAGACCTTGTTCAAATATTTTTCTCCGGAATATGTACCAGTACAGTATGGAGGCCTGAGCCGAGTAAATGATCCCGATTTTAGCGCTGCCGAGGGTGGCGTTTCGGAGGTGACCCTCAAAGCAGGGAAACAGGTCATTGAGATTCCAGCCACAGAGGTGGGAAGGGCACTGCTTTGGGAGATTACGGTAGTAGGGTGGGACGTGAGCTACGGGGCACAGTTTGTTCCAAGTGCAGAAACGAGCTATACAGTGATTATTCACAAGACAAAGAAGTTTTCCCCCAATGAAGAACCTGTTCGTCATTCTTTCAAAATTGGAGAGCCAGGGAAGGTGGTGCTAACCGTTGAGAACAATTCGTCAAAGAGAAAGAAGATTCTTTACAGATCCAAAGTGATAAGCGCCTGACTCATCTCGCTCTGCCCATGCTATCACTGGCCGTAGCAGAGGGCCTGGCTCTGTAAATTGCAGAATTATTTTTACTATTCCTGGGTGTTGACATTTCTGGCGATGGGGGTAGGAATGCAAGTTAAGCATTTATTTGGCAGTATATTTGCGCATATATATATATATATATATATTTAGATAAGAGTCATAGACGTTGTGCACCTCATTGGGTAGCATCATTATTGGCACAGAGATTTGTAGGAAATAACTTGTATAGATTATATATACAAGGGATTTAGATTATTGGCACTTTTAGATTTGGCTTCGATTGATTTCCAGTCCAGATTCAAAAAAAAAAAAGAAAAAGAAACGAGGAGCATCATGCAAGTTTCGATCCATCCTGCACATTTGGTTGCTGGGTTTTGTAAATTGGCTGTATACTGTCGGGGTTCGTTCATCCATCCAGATGTTAATTTTGTTCCAGAGATTTGAAATATTTGCTATTGTAAGGTTTGCGTTATAATAGATACAGATTATTGTCGCTTTCCAAAAA

Ace file of the UniGene sp_v1.1_unigene21267

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	2.0e-19	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	patellin-	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	76%
Blast2go	Cellular retinaldehyde-binding/triple function, N-terminal	IPR008273	-	76%
Blast2go	GOLD	IPR009038	-	76%
Blast2go	CRAL/TRIO, N-terminal domain	IPR011074	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg: your sequence is shorter than subject: 558 - 592

Fln protein: MAATTEAATVPVHVAVPAEVPANVHVAVPAEAPANVPVEAPATEAVKVEGEAVKTSDVEAGASVAEEGNQELRSSFKEESNFVSDLKESEKKALQELRVRVEEALKNNEFVEPPPAPPKSKSTEGEKTEGVKEVIEVEEEKKTISETEVKAEAGDASKDKTPVEETKSTPAAPVTETTETPPPVETPAGAQGEVPATETAAEVTEAAPPAPPEDIYLWGVPLAPSKGDERTDVVLLKFLRARDFKVSDAFTMLKNTVLWRKKFGVDGILEEDLGHDWDGVAYMHGYDKEGHPVCYNVYGVFQDNELYQKTFGDETKREKFLRWRVQLLEKGIQEQLSFSPGGVSSMVQITDLKNSASTLGKKDLKQAANQILTLLQDNYPEFVAKKIFVNASWWYLAYYTMISHFVSPRTSSKFVAARPTKVSETLFKYFSPEYVPVQYGGLSRVNDPDFSAAEGGVSEVTLKAGKQVIEIPATEVGRALLWEITVVGWDVSYGAQFVPSAETSYTVIIHKTKKFSPNEEPVRHSFKIGEPGKVVLTVENNSSKRKKILYRSKVISA*

Protein Length: 559

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAGCTCCTACACCAAGGAAGGAGAAAGACAGAGAGAAGCAGGCAGCTGACAATCACCGGGGATTTCTTCTCAAGCCTCCTCGTCGGTCGAGAGTTCGATCCGCGTAAAAGGCCTGAATTGTCATTTTGCCATACGATCAATCAATCCAAGTTCTCTGCTTCTTTTTTTTTAAATCACGAC_-_ATGGCTGCCACTACAGAGGCTGCTACTGTTCCTGTTCATGTTGCTGTGCCGGCCGAAGTTCCTGCAAATGTTCATGTTGCTGTGCCGGCCGAAGCTCCTGCAAATGTTCCTGTCGAAGCTCCTGCAACGGAAGCCGTGAAGGTTGAGGGCGAAGCGGTGAAAACGTCAGATGTAGAGGCAGGGGCTTCTGTTGCTGAGGAAGGAAACCAGGAGCTGCGTTCTTCGTTCAAGGAGGAGAGCAACTTTGTGTCCGATTTGAAGGAATCGGAGAAAAAGGCTTTGCAAGAGTTGAGGGTTCGAGTCGAGGAAGCTCTCAAAAATAATGAATTCGTTGAACCTCCTCCTGCTCCGCCCAAGTCCAAGAGCACTGAAGGCGAAAAGACCGAGGGCGTAAAGGAGGTTATCGAAGTTGAAGAAGAAAAGAAGACGATCTCCGAAACAGAAGTGAAAGCCGAAGCCGGAGATGCTTCAAAAGACAAAACTCCAGTTGAGGAAACGAAAAGCACCCCTGCGGCTCCAGTTACTGAAACTACTGAAACGCCTCCGCCAGTCGAAACCCCCGCCGGGGCGCAGGGTGAAGTCCCCGCCACCGAAACTGCGGCGGAGGTAACCGAGGCTGCTCCCCCTGCTCCCCCGGAAGACATCTACCTGTGGGGAGTCCCTTTGGCGCCCAGCAAGGGCGATGAGCGCACAGACGTCGTGTTATTGAAATTCCTCCGTGCCAGGGACTTTAAAGTTAGCGATGCCTTTACTATGCTCAAGAACACGGTCCTATGGAGAAAGAAATTCGGAGTGGACGGCATACTGGAAGAGGATTTGGGGCATGATTGGGATGGGGTCGCCTATATGCATGGCTATGATAAGGAAGGGCATCCCGTCTGCTACAATGTTTACGGCGTTTTCCAAGACAATGAGCTCTACCAGAAGACCTTTGGCGATGAAACCAAGCGCGAGAAGTTCCTGCGATGGAGGGTTCAGCTTCTTGAAAAGGGCATCCAGGAGCAACTCAGTTTCAGTCCCGGGGGCGTTAGCTCCATGGTCCAAATCACCGATCTCAAAAATTCGGCATCTACTCTCGGCAAAAAGGATCTCAAACAGGCTGCCAATCAGATCCTCACCCTCCTGCAAGATAATTACCCTGAGTTCGTTGCCAAAAAGATTTTTGTCAATGCCTCGTGGTGGTACTTGGCTTATTATACCATGATATCTCACTTTGTCTCTCCAAGAACCAGTAGCAAGTTTGTTGCTGCCCGCCCTACCAAGGTGTCGGAGACCTTGTTCAAATATTTTTCTCCGGAATATGTACCAGTACAGTATGGAGGCCTGAGCCGAGTAAATGATCCCGATTTTAGCGCTGCCGAGGGTGGCGTTTCGGAGGTGACCCTCAAAGCAGGGAAACAGGTCATTGAGATTCCAGCCACAGAGGTGGGAAGGGCACTGCTTTGGGAGATTACGGTAGTAGGGTGGGACGTGAGCTACGGGGCACAGTTTGTTCCAAGTGCAGAAACGAGCTATACAGTGATTATTCACAAGACAAAGAAGTTTTCCCCCAATGAAGAACCTGTTCGTCATTCTTTCAAAATTGGAGAGCCAGGGAAGGTGGTGCTAACCGTTGAGAACAATTCGTCAAAGAGAAAGAAGATTCTTTACAGATCCAAAGTGATAAGCGCCTGA___CTCATCTCGCTCTGCCCATGCTATCACTGGCCGTAGCAGAGGGCCTGGCTCTGTAAATTGCAGAATTATTTTTACTATTCCTGGGTGTTGACATTTCTGGCGATGGGGGTAGGAATGCAAGTTAAGCATTTATTTGGCAGTATATTTGCGCATATATATATATATATATATATTTAGATAAGAGTCATAGACGTTGTGCACCTCATTGGGTAGCATCATTATTGGCACAGAGATTTGTAGGAAATAACTTGTATAGATTATATATACAAGGGATTTAGATTATTGGCACTTTTAGATTTGGCTTCGATTGATTTCCAGTCCAGATTCAAAAAAAAAAAAGAAAAAGAAACGAGGAGCATCATGCAAGTTTCGATCCATCCTGCACATTTGGTTGCTGGGTTTTGTAAATTGGCTGTATACTGTCGGGGTTCGTTCATCCATCCAGATGTTAATTTTGTTCCAGAGATTTGAAATATTTGCTATTGTAAGGTTTGCGTTATAATAGATACAGATTATTGTCGCTTTCCAAAAA

Fln Alignment:

sp_v1.1_unigene21267___GEAVKTSDVEA------GASVAEEGNQELRSSFKEESNFVSDLKESEKKALQELRVRVEEALKNNEFVE
B8LQX3_______________GETVKAEVVEAVEANGTGAAESSPVIEPRVTSFKEESNFVSDLKESERKALQELKCRIEEAILKNEFSE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
43		16	66	16	0.988813
44	83		16		0.994512
46			83	16	0.994512
610	75		25		1.0
871	11	88			0.923564
893	83			16	0.999991
894		16		83	0.999991
896	83			16	0.999991
898	16	83			0.999991
899		16	83		0.999991
901	83			16	0.999991
902		83		16	0.999991
903	83		16		0.999991
905	83	16			0.999991
906		83		16	0.999991
910		16	83		0.999991
912	16		83		0.999991
980	23		76		1.0
1402		14	85		0.999981
1403	14		85		0.999981
1406		14		85	0.999981
1993			16	83	0.994512
1994			83	16	0.994512
2064	54			18	1.0
2066	10			40	1.0
2116			62	37	1.0
2417	25			50	0.995533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2032	2053	AT AT AT AT AT AT AT AT AT AT AT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain