SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21255

Length: 3746 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21255
CGTCGTGACCTTGGCTGTCACTCAAAGGAAAACTATCATCCAAGGCTATCGAAATCACCCCTTCCGTACACACGCTCTTTGAAAAAGAGAGAGAAACTGCTTGGAGATAGGAATTGTGAAGGATAAAAATTTATTAATCCATGTAAGAAAGGCATGTTTCCCTAATTCGGGATTTTGCTCCGCAGTAAGACTCCAACTCTGCCCTTGATGTGCAATTCATTCGATATTAATATATGACTTTGCACATATAGATTCGCTAGTAAGCCCCTATACAATCTTCGAGGGGAAAAACCAATCGCTCAGGCGCAGAGGTTCCTCCGAAAGCTGGTTTTCGGGTTTATTCGAATTAAAAGGAAGAGAAGTTTCGATCAGATCCACACTTCGATCTCACAACCTCAGCAGCGGCTGAAGGAGCAGGCAGCTCGAAGAAACACTCATTCTCATCAAACAACAATGCCTCTAAGACTCGAAATCAAGCGCAAACTCGCGCAAAGGTCAGAGCGTGTTAAATCCGTAGATCTTCATCCTACTGAGCCATGGGTCCTTGCAAGCCTTTATTCTGGCAGTGTATATATATGGAATTACCAGTCGCAGACTTTGGCGAAATCTTTTGAAGTCACAGAACTTCCAGTACGATCAGCAAAGTTTATAGCTCGAAAGCAGTGGATTGTAGCAGCTGCAGATGATATGATAATTCGCGTTTTCAACTATAACACCATGGACAAGGTCAAATCATTTGAAGCACACACTGATTATATTAGGTGTGTGGCAGTTCATCCAACCCTTCCGTATGTACTCTCATCATCGGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAGATTTTTGAAGGTCACTCTCATTATGTTATGCAAGTTGCATTTAATCCCAAGGATACAAACACATTTGCAAGTGCCTCACTAGACCGTACCATCAAGATATGGAACCTTGGCTCTCCAGACCCAAATTTTACGCTTGAGGCTCACATGAAAGGTGTAAACTGTGTTGACTACTATACAGGAGGTGACAGACCATACCTTATTACAGGGTCTGATGATCAGACAGCAAAGGTATGGGACTACCAGACAAAGTCATGTGTTCAGACACTTGAAGGACATACACATAATGTCTCTGCAGTCTGTTTTCACCCTGAGCTTCCTATCATCATCACAGGCTCAGAAGATGGCACTGTTCGCATCTGGCATGCAACTACATATAGGCTTGAAAATACTTTGAATTATGGACTGGAAAGAGTTTGGGCGATTGGATATATGAAGAGTTCAAACAGGGTTGCCATTGGATATGATGAAGGTGCAATCATGATAAAGATTGGTCGAGAGGAGCCAGTTGCCAGTCTGGACAGTAGTGGTAAAATTATATGGGCAAAAAATGCTGAAATACAGACAGTAAACATCAAAGCTGTTGGAGGAGATTTTGAGGTAACAGATGGTGAGAGGTTGCATCTAGCTGTTAAGGAATTGGGAAGCTGTGATTTATATCCACAAAGTTTAAAGCACAATCCAAATGGAAGATTTGTTGTTGTATGTGGTGATGGTGAATACATAATTTATACGGCACTGGCATGGAGGAATAGATCTTTTGGATCTGCACTTGAATTTGTTTGGGCTTCAGATGGAGAATATGCAGTTCGAGAAAGTACTTCCAAGATCAAGATTTTTAGCAAGACATTTCAGGAAAGGAAGAGCATTCGGCCAACATTTTCTGCTGAGGGTATTTATGGGGGAGCCTTGTTAGCTGTACGGTCAAATGATTTTGTTTGCTTCTATGACTGGGCTGAATGCCGTGTAATTCGGCGAATAGATGTTAAAGTGAAAAATATCTACTGGGCAGACAGTGGTGATCTTGTTGCGCTCAGAAGTGACAACTCATTCTATATTTTGAAATACAATAGGGAGGCTGTTTCTGCATATCTGGAGAGTGGTCAACCGATTGATGAGCAAGGAGTGGAGGATGCATTTGAACTGTTGTACGAAATAAGTGAACGAATTCGTACAGGCCTATGGGTCGGGGATTGTTTTATTTACAATAACTCAGCCTGGCGCCTCAACTACTGTGTTGGTGGCGAGGTAACTACCATGTGTCATTTGGATCGACCAATGTATCTGTTAGGTTATCTATCCAGCCAGAGTCGAGTGTACCTAATTGACAAAGAATTCAACGTGATGAGCTATACATTATTGCTTAGCTTAATAGAGTACAAGACTCTTGTTATGCGTGGAGATTTGGAGAGGGCAAATGATATTTTGCCCACAATTCCAAGGGAGCATCTTAACAGTGTGGCTCGTTTTCTTGAGTCTCGGGGAATGTTGGAGGAAGCTCTTGAAGTGGCTACTGATCCTGATTACAAATTTGACTTAGCTGTGCAACTTGGAAGACTTGAAGTTGCACAGGAAATAGCAATAGAATCTCAAAGCGAATCCAAATGGAAGCAATTGGGGGAGCTTGCCATGTCCTTTGGAAAGTTAGATATGGCAGAAAATTGCCTAAGCCGTGCAGCAGATCTGAGTGGACTGTTGCTTCTCTATTCTTCTTTGGGAGATGCAGAAGGGATCTCGAAACTTGCATCGATGGCCAGAGATCAGGGGAAGAACAATGTTTCTTTCCTGTGTTTATTCATGCTGGGAAAGTTAGAAGAATGCATTCAACTTTTGGTAGACAGCAATCGTATACCTGAAGCTGCTTTTATGGCTCGTTCCTATCTTCCCAGCAAGGTTTCAGAAATTGTCTCTATTTGGCGTAATGATCTCAAAAAGGTGAACCAAAAGGCGGCTGAAGCTTTAGCAGATCCAGAAGAGTATCCCAACCTGTTTGAAGATTGGCATTTAGCACTTGATGCTGAAGCTAAACTAAGGAGATGCAGAGATGGGTATCCTCCTGCGGAAGATTACTATCGTTATATTGGTATTGCAAATAGAGACCTCTTAGAAGATTTTAAGAATATGCAAGTCAATGGAGATACCCCTGTCGAAAATGGGGATTCTTTTCATGAGGTTACTGAGGTAATTGAAAATTATGTACATGATGGTAACCAAATGGTTGATGGGGAAAATTATTTGGAAGTCGAAGATTCCAATGGGGAGGTTCTTGTTAATGGTAATGAGGAGGAAGAAGAGTGAAACACATTAATTAAATAAGCCCATCAGCTGGATCTTGCTGCTAGCAGTTTAGCTGCGTCTGATTGAGATTAAGCAAGATTTGGTTAAGGTGTTAGGGATCATGTCTTAGGAGGGAGGCAGATGAATTAATCGCTGCAGGCAAGTACGAGAATTATTTTATCGTGTAATACAGGATGGCTCTGAACGGGCTCCGAGGTATTGATTTTCTTTATTGTTAATGTATATTAATATATTCATGCTTCAAATTGAAATGTTACCTTTACATATTCATCGGATCAGCTCAGCTTGAAGTCGATAAATGTGTCGTGATTGTCAAAAGAACTTGGGTCAATATCTGCTTGTGGCAGACTACAATAGTCACTTATGGACCTATTTTAGATACATGTATTTTTGGGCTTCTCGTTTGAAGGTCCATGTGGTTGAGCTTCACCATTTTATCATCTTGTTTCACTTCATAATTGTCTGCCTGACGAATTGCATTTCATGTCATTGGGACTGTGATAGGATTTATCGATGAAGGGCATTCCGTGTAAACTGAGAATATTGTATTAAAGAGAATGATTTTGTTGAGCCTTGCATCTTGTGAGTTT

Ace file of the UniGene sp_v1.1_unigene21255

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer beta subunit, putative (EC:2.7.11.7)	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	coatomer protein subunit beta 2 (beta prime)	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	90%
Blast2go	Coatomer, WD associated region	IPR006692	-	90%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	90%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	90%
Blast2go	Coatomer beta' subunit	IPR016453	-	90%
Blast2go	WD40-repeat-containing domain	IPR017986	-	90%
Blast2go	WD40 repeat, subgroup	IPR019781	-	90%
Blast2go	WD40 repeat 2	IPR019782	-	90%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 901 - 314

Fln protein: MPLRLEIKRKLAQRSERVKSVDLHPTEPWVLASLYSGSVYIWNYQSQTLAKSFEVTELPVRSAKFIARKQWIVAAADDMIIRVFNYNTMDKVKSFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLEAHMKGVNCVDYYTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSNRVAIGYDEGAIMIKIGREEPVASLDSSGKIIWAKNAEIQTVNIKAVGGDFEVTDGERLHLAVKELGSCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWASDGEYAVRESTSKIKIFSKTFQERKSIRPTFSAEGIYGGALLAVRSNDFVCFYDWAECRVIRRIDVKVKNIYWADSGDLVALRSDNSFYILKYNREAVSAYLESGQPIDEQGVEDAFELLYEISERIRTGLWVGDCFIYNNSAWRLNYCVGGEVTTMCHLDRPMYLLGYLSSQSRVYLIDKEFNVMSYTLLLSLIEYKTLVMRGDLERANDILPTIPREHLNSVARFLESRGMLEEALEVATDPDYKFDLAVQLGRLEVAQEIAIESQSESKWKQLGELAMSFGKLDMAENCLSRAADLSGLLLLYSSLGDAEGISKLASMARDQGKNNVSFLCLFMLGKLEECIQLLVDSNRIPEAAFMARSYLPSKVSEIVSIWRNDLKKVNQKAAEALADPEEYPNLFEDWHLALDAEAKLRRCRDGYPPAEDYYRYIGIANRDLLEDFKNMQVNGDTPVENGDSFHEVTEVIENYVHDGNQMVDGENYLEVEDSNGEVLVNGNEEEEE*

Protein Length: 902

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGAAAACTATCATCCAAGGCTATCGAAATCACCCCTTCCGTACACACGCTCTTTGAAAAAGAGAGAGAAACTGCTTGGAGATAGGAATTGTGAAGGATAAAAATTTATTAATCCATGTAAGAAAGGCATGTTTCCCTAATTCGGGATTTTGCTCCGCAGTAAGACTCCAACTCTGCCCTTGATGTGCAATTCATTCGATATTAATATATGACTTTGCACATATAGATTCGCTAGTAAGCCCCTATACAATCTTCGAGGGGAAAAACCAATCGCTCAGGCGCAGAGGTTCCTCCGAAAGCTGGTTTTCGGGTTTATTCGAATTAAAAGGAAGAGAAGTTTCGATCAGATCCACACTTCGATCTCACAACCTCAGCAGCGGCTGAAGGAGCAGGCAGCTCGAAGAAACACTCATTCTCATCAAACAACA_-_ATGCCTCTAAGACTCGAAATCAAGCGCAAACTCGCGCAAAGGTCAGAGCGTGTTAAATCCGTAGATCTTCATCCTACTGAGCCATGGGTCCTTGCAAGCCTTTATTCTGGCAGTGTATATATATGGAATTACCAGTCGCAGACTTTGGCGAAATCTTTTGAAGTCACAGAACTTCCAGTACGATCAGCAAAGTTTATAGCTCGAAAGCAGTGGATTGTAGCAGCTGCAGATGATATGATAATTCGCGTTTTCAACTATAACACCATGGACAAGGTCAAATCATTTGAAGCACACACTGATTATATTAGGTGTGTGGCAGTTCATCCAACCCTTCCGTATGTACTCTCATCATCGGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAGATTTTTGAAGGTCACTCTCATTATGTTATGCAAGTTGCATTTAATCCCAAGGATACAAACACATTTGCAAGTGCCTCACTAGACCGTACCATCAAGATATGGAACCTTGGCTCTCCAGACCCAAATTTTACGCTTGAGGCTCACATGAAAGGTGTAAACTGTGTTGACTACTATACAGGAGGTGACAGACCATACCTTATTACAGGGTCTGATGATCAGACAGCAAAGGTATGGGACTACCAGACAAAGTCATGTGTTCAGACACTTGAAGGACATACACATAATGTCTCTGCAGTCTGTTTTCACCCTGAGCTTCCTATCATCATCACAGGCTCAGAAGATGGCACTGTTCGCATCTGGCATGCAACTACATATAGGCTTGAAAATACTTTGAATTATGGACTGGAAAGAGTTTGGGCGATTGGATATATGAAGAGTTCAAACAGGGTTGCCATTGGATATGATGAAGGTGCAATCATGATAAAGATTGGTCGAGAGGAGCCAGTTGCCAGTCTGGACAGTAGTGGTAAAATTATATGGGCAAAAAATGCTGAAATACAGACAGTAAACATCAAAGCTGTTGGAGGAGATTTTGAGGTAACAGATGGTGAGAGGTTGCATCTAGCTGTTAAGGAATTGGGAAGCTGTGATTTATATCCACAAAGTTTAAAGCACAATCCAAATGGAAGATTTGTTGTTGTATGTGGTGATGGTGAATACATAATTTATACGGCACTGGCATGGAGGAATAGATCTTTTGGATCTGCACTTGAATTTGTTTGGGCTTCAGATGGAGAATATGCAGTTCGAGAAAGTACTTCCAAGATCAAGATTTTTAGCAAGACATTTCAGGAAAGGAAGAGCATTCGGCCAACATTTTCTGCTGAGGGTATTTATGGGGGAGCCTTGTTAGCTGTACGGTCAAATGATTTTGTTTGCTTCTATGACTGGGCTGAATGCCGTGTAATTCGGCGAATAGATGTTAAAGTGAAAAATATCTACTGGGCAGACAGTGGTGATCTTGTTGCGCTCAGAAGTGACAACTCATTCTATATTTTGAAATACAATAGGGAGGCTGTTTCTGCATATCTGGAGAGTGGTCAACCGATTGATGAGCAAGGAGTGGAGGATGCATTTGAACTGTTGTACGAAATAAGTGAACGAATTCGTACAGGCCTATGGGTCGGGGATTGTTTTATTTACAATAACTCAGCCTGGCGCCTCAACTACTGTGTTGGTGGCGAGGTAACTACCATGTGTCATTTGGATCGACCAATGTATCTGTTAGGTTATCTATCCAGCCAGAGTCGAGTGTACCTAATTGACAAAGAATTCAACGTGATGAGCTATACATTATTGCTTAGCTTAATAGAGTACAAGACTCTTGTTATGCGTGGAGATTTGGAGAGGGCAAATGATATTTTGCCCACAATTCCAAGGGAGCATCTTAACAGTGTGGCTCGTTTTCTTGAGTCTCGGGGAATGTTGGAGGAAGCTCTTGAAGTGGCTACTGATCCTGATTACAAATTTGACTTAGCTGTGCAACTTGGAAGACTTGAAGTTGCACAGGAAATAGCAATAGAATCTCAAAGCGAATCCAAATGGAAGCAATTGGGGGAGCTTGCCATGTCCTTTGGAAAGTTAGATATGGCAGAAAATTGCCTAAGCCGTGCAGCAGATCTGAGTGGACTGTTGCTTCTCTATTCTTCTTTGGGAGATGCAGAAGGGATCTCGAAACTTGCATCGATGGCCAGAGATCAGGGGAAGAACAATGTTTCTTTCCTGTGTTTATTCATGCTGGGAAAGTTAGAAGAATGCATTCAACTTTTGGTAGACAGCAATCGTATACCTGAAGCTGCTTTTATGGCTCGTTCCTATCTTCCCAGCAAGGTTTCAGAAATTGTCTCTATTTGGCGTAATGATCTCAAAAAGGTGAACCAAAAGGCGGCTGAAGCTTTAGCAGATCCAGAAGAGTATCCCAACCTGTTTGAAGATTGGCATTTAGCACTTGATGCTGAAGCTAAACTAAGGAGATGCAGAGATGGGTATCCTCCTGCGGAAGATTACTATCGTTATATTGGTATTGCAAATAGAGACCTCTTAGAAGATTTTAAGAATATGCAAGTCAATGGAGATACCCCTGTCGAAAATGGGGATTCTTTTCATGAGGTTACTGAGGTAATTGAAAATTATGTACATGATGGTAACCAAATGGTTGATGGGGAAAATTATTTGGAAGTCGAAGATTCCAATGGGGAGGTTCTTGTTAATGGTAATGAGGAGGAAGAAGAGTGA___AACACATTAATTAAATAAGCCCATCAGCTGGATCTTGCTGCTAGCAGTTTAGCTGCGTCTGATTGAGATTAAGCAAGATTTGGTTAAGGTGTTAGGGATCATGTCTTAGGAGGGAGGCAGATGAATTAATCGCTGCAGGCAAGTACGAGAATTATTTTATCGTGTAATACAGGATGGCTCTGAACGGGCTCCGAGGTATTGATTTTCTTTATTGTTAATGTATATTAATATATTCATGCTTCAAATTGAAATGTTACCTTTACATATTCATCGGATCAGCTCAGCTTGAAGTCGATAAATGTGTCGTGATTGTCAAAAGAACTTGGGTCAATATCTGCTTGTGGCAGACTACAATAGTCACTTATGGACCTATTTTAGATACATGTATTTTTGGGCTTCTCGTTTGAAGGTCCATGTGGTTGAGCTTCACCATTTTATCATCTTGTTTCACTTCATAATTGTCTGCCTGACGAATTGCATTTCATGTCATTGGGACTGTGATAGGATTTATCGATGAAGGGCATTCCGTGTAAACTGAGAATATTGTATTAAAGAGAATGATTTTGTTGAGCCTTGCATCTTGTGAGTTT

Fln Alignment:

sp_v1.1_unigene21255___EIKRKLAQRSERVKSVDLHPTEPWVLASLYSGSVYIWNYQSQTLAKSFEVTELPVRSAKFIARKQWIVAAADDMIIRVFNYNTMDKVKSFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASAS-------------------------------------------LDRTIKIWNLGSPDPNFTLEAHMKGVNCV-DYYTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIW
A9NPC1_______________KLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTG-KCLKVLPAHSDPVTAVHFN-RDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
724		83	16		0.994512
1118	14		85		0.993533
1122	85			14	0.993533
1258		16		83	0.994512
1268		16	83		0.994512
1270	83	16			0.994512
1272	16		83		0.994512
1286	16		83		0.994512
1577	11		88		0.923564
1656	12		87		0.992554
1658			87	12	0.992554
1722	83			16	0.994512
1724	80		20		0.995493
1732			71	28	1.0
1734		71		28	1.0
1735	71		28		1.0
1738	71	28			1.0
1741			33	66	1.0
1742			33	66	1.0
1748		40	60		1.0
1750		40	60		1.0
1751			60	40	1.0
1752		40	60		1.0
1753	40			60	1.0
1935	85			14	0.993533
1942		14		85	0.993533
1943	14			85	0.993533
1946		14	85		0.993533
1947	14	85			0.993533
1968		14		85	0.993533
2014	20		80		0.995493
2286		10		90	0.90298
2325	70		30		1.0
2774	16			83	0.994512
3025			10	90	0.90298
3414		14	85		0.993533
3470		16		83	0.994512
3733		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain