SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21241

Length: 545 nt

UniGene Fasta

>sp_v1.1_unigene21241
CGTCGTGACCTTGGCTGTCACTCAATTTTGTGTTTGCCTTTGGTGTCTAGACGAGTCTTGGTACTTTGGCTTGTTCACTCTTTTTATGCTCTTCTTATTTGAATCCACAATGGCAAAAAGTCGATTGAAAACTTTAACAGAGCTTCGGCGGGTTCGAGTAGATAATCAAACATTAATGGTGCATCGATGTGGAAAATGGGTGAAGCTATCTGGAATGGATCTTCTTCCTGGAGATGTTGTATCTATTGGTCGTTCTGCAGGGCAAAGTGGAGAAGAGAGGACGATCCCAGCTGATATGTTGTTACTGGCTGGCAGTGCAATTACAAATGAGGCCATTTTGACTGGGGAATCTACCCCACAATGGAAGGTTTCCATCCAAGGTAGGGAATTGGGAGAAAGGTTATCAGCACGACGCGATAAAAATCACGTACTTTTTGGTGGAACAAAGATACTGCAGCATACAGCCGATAAGGGTGCCCATCTCAAAACTCCTGATGGAGGTGCTTGGCAATAGTTCTACGCACTGGATTCGAGACAAGTCAGGG

Ace file of the UniGene sp_v1.1_unigene21241

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cation-transporting atpase 13a1, putative (EC:3.6.3.8)	-	-	76%
FL-Next	sp=Probable cation-transporting ATPase; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	cation-transporting atpase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	82%
Blast2go	stem cell fate determination	GO:0048867	Biological Process	82%
Blast2go	pollen germination	GO:0009846	Biological Process	82%
Blast2go	pollen maturation	GO:0010152	Biological Process	82%
Blast2go	meristem maintenance	GO:0010073	Biological Process	82%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	82%
Blast2go	cation-transporting ATPase activity	GO:0019829	Molecular Function	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	0.0	82%
Blast2go	ATPase, P-type, cytoplasmic transduction domain A	IPR023300	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LT02

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 798 aas, your sequence is shorter than subject: 171 - 1179

Fln protein: VVTLAVTQFCVCLWCLDESWYFGLFTLFMLFLFESTMAKSRLKTLTELRRVRVDNQTLMVHRCGKWVKLSGMDLLPGDVVSIGRSAGQSGEERTIPADMLLLAGSAITNEAILTGESTPQWKVSIQGRELGERLSARRDKNHVLFGGTKILQHTADKGAHLKTPDGGAWQ*

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTGTTTGCCTTTGGTGTCTAGACGAGTCTTGGTACTTTGGCTTGTTCACTCTTTTTATGCTCTTCTTATTTGAATCCACAATGGCAAAAAGTCGATTGAAAACTTTAACAGAGCTTCGGCGGGTTCGAGTAGATAATCAAACATTAATGGTGCATCGATGTGGAAAATGGGTGAAGCTATCTGGAATGGATCTTCTTCCTGGAGATGTTGTATCTATTGGTCGTTCTGCAGGGCAAAGTGGAGAAGAGAGGACGATCCCAGCTGATATGTTGTTACTGGCTGGCAGTGCAATTACAAATGAGGCCATTTTGACTGGGGAATCTACCCCACAATGGAAGGTTTCCATCCAAGGTAGGGAATTGGGAGAAAGGTTATCAGCACGACGCGATAAAAATCACGTACTTTTTGGTGGAACAAAGATACTGCAGCATACAGCCGATAAGGGTGCCCATCTCAAAACTCCTGATGGAGGTGCTTGGCAATAGTTCTACGCACTGGATTCGAGACAAGTCAGGG

Fln Alignment:

sp_v1.1_unigene21241___FCVCLWCLDESWYXXXXXXXXXXXXESTMAKSRLKTLTELRRVRVDNQTLMVHRCGKWVKLSGMDLLPGDVVSIGRSAGQSG-EERTIPADMLLLAGSAITNEAILTGESTPQWKVSIQGRELGERLSARRDKNHVLFGGTKILQHTADKGAHLKTPDGG
Q9LT02_______________FCVGLWCLDEFWYYSVFTLFMLFMFESTMAKSRLKTLTDLRSVRVDSQTVMVYRSGKWVKLLGTDLLPGDVVSIGRPSTQTGGEDKTVPADMLLLVGSAIVNEAILTGESTPQWKVPIVGQRSDEKLSIKRNKNHVLFGGTKILQHSPDKSFSLKTPDGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain