SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21215

Length: 310 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene21215
CGTCGTGACCTTGGCTGTCACTCAGTTTCTTCCCTACTGTTTCTACCCCTTATCACCCTCAGACCACCGTTTCAGCTTTCTTTCATGTCTTGGAACGAATTCGGCATATACATAATTCTATTATATTGAATCTGGCGGACGGCGAACGAAGGAGGCGCTTCTCACTCGGCTCTGGCTTCTATGAAAGAATCGAGATGGAGACCTTCCTCTTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTGTGTGACCAGATCTCTGATGCAGTGTTGGATGCATGCCTTACCCAGGACCCTGACAGCAA

Ace file of the UniGene sp_v1.1_unigene21215

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	METK5; S-adenosylmethionine synthetase 5; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]	-	-	3.0e-14	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	s-adenosylmethionine synthetase	-	-	2.00917e-14	98%

Source	ECs	Term	Type	e value	Identity
AutoFact	Methionine adenosyltransferase.	EC:2.5.1.6	-	3.0e-14	97%

Source	KEGGs	Term	e value	Identity
AutoFact	Cysteine and methionine metabolism	00270	3.0e-14	97%
AutoFact	Biosynthesis of plant hormones	01070	3.0e-14	97%
AutoFact	Metabolic pathways	01100	3.0e-14	97%
AutoFact	Biosynthesis of secondary metabolites	01110	3.0e-14	97%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSM3

Fln msg: Distance to subject end: 245 aas, your sequence is shorter than subject: 38 - 284

Fln protein: METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDS

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTTCCCTACTGTTTCTACCCCTTATCACCCTCAGACCACCGTTTCAGCTTTCTTTCATGTCTTGGAACGAATTCGGCATATACATAATTCTATTATATTGAATCTGGCGGACGGCGAACGAAGGAGGCGCTTCTCACTCGGCTCTGGCTTCTATGAAAGAATCGAG_-_ATGGAGACCTTCCTCTTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTGTGTGACCAGATCTCTGATGCAGTGTTGGATGCATGCCTTACCCAGGACCCTGACAGCAA

Fln Alignment:

sp_v1.1_unigene21215___METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDS
C0PSM3_______________METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
187	20		80		0.995493
188	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain