SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21192

Length: 1529 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein, putative	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	zinc finger	-	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MEGGVVFESVQNPLDRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGCCYTVSLQKGHPCVENSMRHNCPVCFEYLFDSLKAITVLNCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGTCTCTGTCTATCTCAAATTTGATGGAAAAACCCCTTAAGATTCTTCATTTCCGTGATCAAAAGAACTCCGCCTGGTTACTGTGTAGCTCCTCAAATTTTCAGGTAGGCATCAGCAGCGTTGTTCCTCCTTCTCTGCTCTCCTGCATTTCTCAAACTCAAACACCTCTCCTCTCACAATC_-_ATGGAAGGCGGGGTCGTCTTTGAATCTGTGCAAAACCCACTGGATCGCCTGAACACTGGAAATATGGACCATGGTTGCGCCCATTACAGGAGACGATGTCGGATTCGGGCCCCTTGTTGCAATGAGATCTATGATTGTAGGCACTGTCACAATGAAGCCATGAGCCATTTAAAGGACCCCTTGCTGCGCCATGAGCTCCCAAGATACAAAGTTGAACGGGTTATTTGTTCTCTCTGTGACACTGAGCAAAATGTCAAGCAAGTTTGCGAAAACTGTGGTGTTAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGGGTAGGAGGCCGGGATAATTTTTTCCATTGCCAGAAATGTGGTTGTTGCTATACGGTTAGTTTGCAGAAGGGCCACCCCTGCGTAGAGAACTCAATGCGCCACAACTGTCCAGTTTGTTTTGAGTATCTTTTTGATTCTTTAAAGGCAATAACTGTTCTGAATTGTGGTCATACAATGCACGGGGAATGTTTAACAGAAATGAAAAAGCACTCTCAATATTCATGTCCAATGTGCTCCAAGTCAGTCTGTGATATGTCCATAATCTGGGAACAACTAGACGAAGAGATTGCAGCAACACCTATGCCTTATGACTATCAAAATAAGATGGTCTGGATCCTATGCAATGATTGTGACATGTTCTCTGAGGTCCAGTTCCATATTGTTGCACAGAAGTGTTTAAAGTGCAAATCTTACAATACTCGCCAAACAAGGGGACCAGGCCAATAG___TGGTACAGTCGTAGGAATCATGGAGTATTTGTATTTATAATGTCAAGTTTGTATCCTCAGTCACGGCTCTGTCATATGCTCAGTAATCTAGCAGTGATTAGAACAGGATTCAGTTGTAGATTCCCTCCATTGATGGGTTATTCATTGGTTAGTGTATTGCTAGGTCTTGGTTCTGTGTTGCAATCTATGCACATTAGAGCTCAGGGTGCTTTTTCTGCAGACCTGTAAGGTGTAATTTACCTTAAGATGTGGTCAATTCTTAATATTCTTTTTGTGCTGCAGAACAGTCCATATATGTGATTGTACTTTCAAGACCAAAGTAAACTGGTCTATTTAGATGTCCATTACAAGAACCCTGTTGATTTCTTTCAGATTTCTGTCCTCATTTTCTCTTCTTGTAGCATGAACTGCAGGTTAATGGAAAATGTAAATGTCTTGGTCCTGTAGTATGAATTGGGGGTTAATGCAAAATGGAATATGGTCTGTTTTGATTCAAGGC

Fln Alignment:

sp_v1.1_unigene21192___MEGGVVFESVQNPLDRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGCCYTVSLQKGHPCVENSMRHNCPVCFEYLFDSLKAITVLNCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ
D5A9X0_______________MEGGVVFGAVQNPLDRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
286		66	33		0.997452
679	4		96		0.99411
680	4	95			0.994598
682	4	95			0.994598
683	4	95			0.994598
862		16		83	0.999991
1155		91		4	0.919342
1157		95	4		0.995881
1158		91	4		0.919342
1159	95	4			0.995881
1162		4	95		0.996252
1165		4	95		0.996252
1166	4		95		0.996252

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain