SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21185

Length: 1154 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene21185 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Zinc finger protein ZAT5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%
Blast2go	hypothetical protein VITISV_013510 [Vitis vinifera]	-	-	2.44686e-11	43%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	2.44686e-11	43%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q681X4

Fln msg: Distance to subject end: 154 aas,

Fln protein: MMSAEAAMERESCFMDEMRRPQRKKKTDAEDDFDECYYTHMCKICKKKFVSGRAFGGHMRIHGPVATAAAAAAESNGKNLEPQRKRSRAEEIRRPDVEDEEDSQLDGYERSLMGREFETRDANPSSFLRKEFLSWKADRDDWEYSEEEEEEEEGLADGGLQDSTDSEAETDMPGYPSGDSRLMKGKRSKRSRYRVSPAAHFQGAENSVSEEEDMAICLVMLARGVNTRKSKDGAEESADSGSRDMKEPVPEPRLDAFKIMKKRRIKRAEDETEEGKKIMYECSTCNKVFHSYQALGG

Protein Length: 298

Fln nts: TCTGGGTCTTCGTTTCGTTTCGTTCAATTCCACCCTTCACCCACCGCCACCCCGGAAGTCTGTTTTTCTGTACAATTTTGACCACTGGGCATCCTCTATACGTAAAATTCTGGTTACCCACCAGGAAGTCTCGCGTGTTTTGTAGACTTCTAGAAGCGAGGACTGAGCTCCCGGAGGCATCTGTTTTAAAGCTTGCTTTGAGCTTTCTTTTCCAGTAGTTAGTTATTTGATTCATATTGGTTGCAGAGGATTTTCAGAGATTG_-_ATGATGAGTGCTGAAGCTGCTATGGAGAGGGAGAGTTGTTTCATGGATGAAATGCGCAGGCCGCAGAGGAAGAAGAAGACCGACGCAGAGGATGATTTTGACGAGTGTTATTATACTCATATGTGCAAGATTTGCAAGAAGAAGTTCGTCTCAGGGCGGGCTTTTGGCGGTCATATGAGAATTCATGGCCCTGTGGCCACTGCCGCCGCCGCTGCTGCTGAGAGCAATGGGAAAAATCTGGAGCCGCAGAGGAAGAGATCCCGTGCTGAAGAGATTCGAAGGCCTGACGTCGAGGACGAGGAGGATTCGCAGCTTGATGGATACGAGCGGAGCTTGATGGGTCGGGAGTTCGAGACCCGGGACGCTAATCCATCTAGTTTTCTGAGAAAGGAGTTCTTGTCATGGAAAGCCGACCGAGATGACTGGGAGTATTCTGAAGAAGAAGAAGAGGAAGAGGAAGGGCTTGCTGATGGTGGTCTTCAGGATAGTACTGACAGTGAGGCCGAGACCGACATGCCTGGATACCCGAGTGGAGATTCAAGGTTGATGAAGGGAAAGAGATCCAAGAGGTCTAGGTATCGAGTCTCGCCGGCTGCTCATTTTCAGGGCGCAGAGAATTCTGTTTCTGAAGAAGAAGACATGGCGATCTGTCTGGTCATGCTAGCAAGAGGAGTGAATACTCGAAAGTCAAAGGATGGAGCTGAGGAGTCTGCTGATTCTGGATCAAGGGACATGAAGGAACCAGTGCCAGAGCCTCGATTGGATGCTTTCAAGATTATGAAGAAAAGAAGGATTAAGAGGGCTGAGGACGAGACTGAAGAAGGTAAGAAAATTATGTATGAGTGCAGTACATGTAATAAGGTTTTTCATTCATACCAAGCTCTGGGAGGC

Fln Alignment:

sp_v1.1_unigene21185___SGDSRLMKGKRSKRSRYR-------------VSPAAHFQGAENSVS-----------------EEEDMAICLVMLARGVNTRKSKDGAEESADSGSRDMKEPVPEPRLDAFKIMKKRRIKRAEDETEEGKKIMYECSTCNKVFHSYQALGG
Q681X4_______________SDQTQIIKGKRTKRQRSSSTFVVTAATTVTSTSSSAGGSGGERAVSDEYNSAVSSPVTTDCTQEEEDMAICLIMLARGT----------------------VLPSPDL------KNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
172	66		33		1.0
188		16		83	0.994512
229		42		57	1.0
371		75		25	0.996473
390		75		25	0.996473
505		33		66	0.997452
549		60	20		0.99255
552	80	20			0.995493
785	75	25			0.996473
786	75	25			0.996473
802		66	33		0.997452
804			20	80	0.995493
805		80		20	0.995493
806		80	20		0.995493
807	20			80	0.995493
809	20			80	0.995493
812		20	80		0.995493
813	20			80	0.995493
814	20	80			0.995493
820	20			80	0.995493
822			20	80	0.995493
823	20			80	0.995493
825			20	80	0.995493
1097	66		33		0.997452
1099		66	33		0.997452
1100	66			33	0.997452
1104	33			66	0.997452
1105			33	66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
443	456	TCT TCT TCT TCT TC	14
1131	1146	AACGA AACGA AACGA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain