SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21162

Length: 2400 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21162
CGTCGTGACCTTGGCTGTCACTCAAAGTCGACCTTCACAATATGGCGTCGGCCGTTGGGTGTCCCTCTATCATTCGGAAATTTGGCCTCCCTATGTTCTGAAGTGACAACTAGCACAACGCGCTAAGTGAAACCCCGACGACAAATAACGATCCTCGTTACAATTTTCATTACAATCGCATCAGATCAGGGAGGGTCGCGTTCCCGCTGTTCCATATAATGGATACATTATCGATTGGATGGGGTTTTCTGCATCACTATGTGCATTTTGTAAACAATTGAGGCTGGAGGGATTAATTTCTTTGTTAACTTTACTCCGTTACGGATCGGAGAAACAGAACTGCAGGGGATTTTGGCACATATTCGTTTTTGCAACTGGGTCATGGTAATTACTGTGTAAATTTGTGGATCTGGGTATAGGCATATATTTCCAGTTTTCAGCCAAGGAAAGAGATACGCAGAGGCAATCATCATTAGAGTTTCTACCCTACATCAATCTCGTTTTTGCTTGACCTTCCGAGTTGCATTTTGGTGGAAAGAGATTCAAAAAGCAATTGCTCTTGGGCATCTTTCTGGCTGGTATTTCGAATTGCAAGCCCGCCATCGGTTTTCCCAAGCACAAAGGCCAGAATTGGTAAAGAAACACACTCAGAAATGTCTATGAGACCTGCTCAGTTGTCCTCTTATCGGGATAGGACAGTAGAATTCCAGACAATTGTAGAGAGATTACGGAAGTCTTATTCTTCTTCAGAATTTTCGCAATCCAATGGATCTGCTGATAACACAAAGTATGCAGGATCAAGATCTGTTGGTTCTGTGCAGTCCGAGTTCAATAAAAGAGCATCCAGAATTGGATTCGGCATACATCAGACATCTCAAAAACTTGCTAAACTCGCAAAATTGGCCAAAAGAACATCAGTGTTTGATGATCCAACTGTGGAGATCCAAGAACTCACAGCTGTTATCAAGCAAGACATTACTGCATTAAATTCTGCAGTTGCAGACCTGCAAATCCTGTGCAATTCTCAAAATGAAAGTGGGAATACTTCAAAACACACAACAGAACATTCAACCACAGTTGTGGATAACTTAAAAAGCCGATTGATGAGCACTACTAAAGAGTTCAAGGAGGTGTTGACTATGCGAACCGAGAATTTGAAGGTACATGAGAATAGAAGACAGCTGTTTTCTGCCAGTGCTTCAAAAGATTCTACAAATCCATTTGTTCGACAACGCCCTCTTGCAAGTACTAGTCGCTCCAGTGTTTCCCCTCCTGCTTGGGCCAATGGATCAACATCTTCATCCAATATTTTCAACCCAAGGCGGCAAACAAGTGGAGAGCCTCCTGCATCTCCCAGTATGCAAACACAGCTTCAACAGCAAATGGTTCCTTTACAAGATAGCTATATGCAAAGCAGAGCTGAAGCTCTCCAAAATGTAGAATCAACTATTTTGGAGCTCAGTAACATCTTCACACAGCTGGCTACCATGGTTTCTCAACAGGGTGAATTGGCAATCAGGATTGATGAAAATATGGATGATACTCTAGCAAATGTTGAGGGAGCACAAGGAGCATTGCTTAAGTACCTGAATCGCATATCATCAAATCGGTGGTTGATGATCAAGATATTTTTTGTCTTAATTATTTTTTTACTGATCTTTGTTGTTTTTGTTGCTTGAACCATTCTTTCGACTTACGTATATGCTCTTGGTATAAATTGAATCTCATGGAAAATCATATTTGCCTTGGGGGAGGCTAAATTTGGGGCACAAAATATTGAAGTTCCATCATGCCCATAGTTTTCAGCAAAGGTGCTTAGGATCCTTAATTTTGATATCAACAATTATATAGCAGGCAGGATGGTATAGGTTTGGAAGCAACACAATCTATGCTAAAAATATTGAAGGCAAGGTTGATGAGAAGGTATGAGGGCTTAAGCAAGACAGTATATGTACCAGCAAGTGTGGTACCAGTTACCACCGTACCAGTGCATGAAGTATGCTATTTCTGATGCAAGTGGCATTGCAAATTTCTTATGGGACCTTGTCGTTGGCTTTTTAAGATGCATGAGTGCACCTGATGGAATACTGGAACTAAAGTTCTAGTGATAATGTGTGGGAAAAGATAAGGAGGCTTTGGTTCTAGCAGTTTCTTCTGTCTTTTCACTTTCATATGTGTAATATTATACTATCTCAGTTTGCATCTCAAGATTTTCTGCCCCAGACACCAAGCAAATGATTGAATACTGAAGCTATGCAATTCATAAAGTTCTTTTTCAGGGATGAATTTTTAATGAGGGGGACATTGTTGTCTTTTCTCTCTTGACTTCTGTTCTGAGTCATCTGATCTTGTGACATGAAATCAGATTTTAAGTATGGTTCTCTTTGCACTTATTCATCA

Ace file of the UniGene sp_v1.1_unigene21162

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9RPA3_RICCO	-	-	69%
FL-Next	sp=Syntaxin-32; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	qa- syp3 sed5p syntaxin 5-type	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Target SNARE coiled-coil domain	IPR000727	-	79%
Blast2go	Syntaxin, N-terminal	IPR006011	-	79%
Blast2go	Syntaxin/epimorphin, conserved site	IPR006012	-	79%
Blast2go	t-SNARE	IPR010989	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LK09

Fln msg:

Fln protein: MSMRPAQLSSYRDRTVEFQTIVERLRKSYSSSEFSQSNGSADNTKYAGSRSVGSVQSEFNKRASRIGFGIHQTSQKLAKLAKLAKRTSVFDDPTVEIQELTAVIKQDITALNSAVADLQILCNSQNESGNTSKHTTEHSTTVVDNLKSRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASASKDSTNPFVRQRPLASTSRSSVSPPAWANGSTSSSNIFNPRRQTSGEPPASPSMQTQLQQQMVPLQDSYMQSRAEALQNVESTILELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNRISSNRWLMIKIFFVLIIFLLIFVVFVA*

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTCGACCTTCACAATATGGCGTCGGCCGTTGGGTGTCCCTCTATCATTCGGAAATTTGGCCTCCCTATGTTCTGAAGTGACAACTAGCACAACGCGCTAAGTGAAACCCCGACGACAAATAACGATCCTCGTTACAATTTTCATTACAATCGCATCAGATCAGGGAGGGTCGCGTTCCCGCTGTTCCATATAATGGATACATTATCGATTGGATGGGGTTTTCTGCATCACTATGTGCATTTTGTAAACAATTGAGGCTGGAGGGATTAATTTCTTTGTTAACTTTACTCCGTTACGGATCGGAGAAACAGAACTGCAGGGGATTTTGGCACATATTCGTTTTTGCAACTGGGTCATGGTAATTACTGTGTAAATTTGTGGATCTGGGTATAGGCATATATTTCCAGTTTTCAGCCAAGGAAAGAGATACGCAGAGGCAATCATCATTAGAGTTTCTACCCTACATCAATCTCGTTTTTGCTTGACCTTCCGAGTTGCATTTTGGTGGAAAGAGATTCAAAAAGCAATTGCTCTTGGGCATCTTTCTGGCTGGTATTTCGAATTGCAAGCCCGCCATCGGTTTTCCCAAGCACAAAGGCCAGAATTGGTAAAGAAACACACTCAGAA_-_ATGTCTATGAGACCTGCTCAGTTGTCCTCTTATCGGGATAGGACAGTAGAATTCCAGACAATTGTAGAGAGATTACGGAAGTCTTATTCTTCTTCAGAATTTTCGCAATCCAATGGATCTGCTGATAACACAAAGTATGCAGGATCAAGATCTGTTGGTTCTGTGCAGTCCGAGTTCAATAAAAGAGCATCCAGAATTGGATTCGGCATACATCAGACATCTCAAAAACTTGCTAAACTCGCAAAATTGGCCAAAAGAACATCAGTGTTTGATGATCCAACTGTGGAGATCCAAGAACTCACAGCTGTTATCAAGCAAGACATTACTGCATTAAATTCTGCAGTTGCAGACCTGCAAATCCTGTGCAATTCTCAAAATGAAAGTGGGAATACTTCAAAACACACAACAGAACATTCAACCACAGTTGTGGATAACTTAAAAAGCCGATTGATGAGCACTACTAAAGAGTTCAAGGAGGTGTTGACTATGCGAACCGAGAATTTGAAGGTACATGAGAATAGAAGACAGCTGTTTTCTGCCAGTGCTTCAAAAGATTCTACAAATCCATTTGTTCGACAACGCCCTCTTGCAAGTACTAGTCGCTCCAGTGTTTCCCCTCCTGCTTGGGCCAATGGATCAACATCTTCATCCAATATTTTCAACCCAAGGCGGCAAACAAGTGGAGAGCCTCCTGCATCTCCCAGTATGCAAACACAGCTTCAACAGCAAATGGTTCCTTTACAAGATAGCTATATGCAAAGCAGAGCTGAAGCTCTCCAAAATGTAGAATCAACTATTTTGGAGCTCAGTAACATCTTCACACAGCTGGCTACCATGGTTTCTCAACAGGGTGAATTGGCAATCAGGATTGATGAAAATATGGATGATACTCTAGCAAATGTTGAGGGAGCACAAGGAGCATTGCTTAAGTACCTGAATCGCATATCATCAAATCGGTGGTTGATGATCAAGATATTTTTTGTCTTAATTATTTTTTTACTGATCTTTGTTGTTTTTGTTGCTTGA___ACCATTCTTTCGACTTACGTATATGCTCTTGGTATAAATTGAATCTCATGGAAAATCATATTTGCCTTGGGGGAGGCTAAATTTGGGGCACAAAATATTGAAGTTCCATCATGCCCATAGTTTTCAGCAAAGGTGCTTAGGATCCTTAATTTTGATATCAACAATTATATAGCAGGCAGGATGGTATAGGTTTGGAAGCAACACAATCTATGCTAAAAATATTGAAGGCAAGGTTGATGAGAAGGTATGAGGGCTTAAGCAAGACAGTATATGTACCAGCAAGTGTGGTACCAGTTACCACCGTACCAGTGCATGAAGTATGCTATTTCTGATGCAAGTGGCATTGCAAATTTCTTATGGGACCTTGTCGTTGGCTTTTTAAGATGCATGAGTGCACCTGATGGAATACTGGAACTAAAGTTCTAGTGATAATGTGTGGGAAAAGATAAGGAGGCTTTGGTTCTAGCAGTTTCTTCTGTCTTTTCACTTTCATATGTGTAATATTATACTATCTCAGTTTGCATCTCAAGATTTTCTGCCCCAGACACCAAGCAAATGATTGAATACTGAAGCTATGCAATTCATAAAGTTCTTTTTCAGGGATGAATTTTTAATGAGGGGGACATTGTTGTCTTTTCTCTCTTGACTTCTGTTCTGAGTCATCTGATCTTGTGACATGAAATCAGATTTTAAGTATGGTTCTCTTTGCACTTATTCATCA

Fln Alignment:

sp_v1.1_unigene21162___MSMRPAQLSSYRDRTVEFQTIVERLRKSYSSSEFSQSNGSADNTKYAGSRSVGSVQ------SEFNKRASRIGFGIHQTSQXXXXXXXXXXRTSVFDDPTVEIQELTAVIKQDITALNSAVADLQILCNSQNESGNTSKHTTE--HSTTVVDNLKSRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASASKDSTNPFVRQRPLASTSRSSVSPPA-WANGSTSSSNIFNPRRQTSGEPPAXXXXXXXXXXXXXXXX----DSYMQSRAEALQNVESTILELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNRISSNRWLMIK
Q9LK09_______________MSARHGQ-SSYRDRSDEFFKIVETLRRSIAPAP------AANNVPYGNNRNDGARREDLINKSEFNKRASHIGLAINQTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAASESVPLPWANGSSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRWLMMK

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
645	72			27	1.0
873	90			10	0.90298
1009			25	75	1.0
1010			75	25	1.0
1012	75		25		1.0
1013	75			25	1.0
1014	75		25		1.0
1015	25			75	1.0
1019			75	25	1.0
1020			27	72	1.0
1023	72			27	1.0
1024	72		27		1.0
1027	27			72	1.0
1422	83			16	0.994512
1435		85	14		0.993533
1436	85			14	0.993533
1437	85		14		0.993533
1439	85	14			0.993533
1440		14		85	0.993533
1441			85	14	0.993533
1443	85		14		0.993533
1445	85			14	0.993533
1446	85		14		0.993533
1453	85	14			0.993533
1454	14			14	0.984337
1862		87		12	0.992554
1922	57		42		1.0
1958	10		90		0.90298
2021	82			11	0.999919
2026	11		76	5	0.999894
2233		30		70	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain