SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21139

Length: 2137 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21139
CGTCGTGACCTTGGCTGTCACTCAGCGCTCATATCTCTGCCTTCTTGCTGCTGCTTAGTTTTTGTATTTGCCATCCATTTGTGAGATGGAGAATCACGGGAGCTCTGCAGGAGGCGGGTGGTGGCTCTATTTCCTCCTCTTTAGAAATGGTTGCAGTCGTTTCTCGTTGGACTCCGACGATGTTTGTGGGTGGCGTCAGTGGCATCTTTATATTGCACTGCTTATTGCTGCTGTATCTGCTGTTTTGGCCTCCTGGTTGATCCCGGGAGGCTGTGCGTGGGCGGGGAGACGCAGGAGGTCGGGCGGCGTACCCATTCCTGGTCCCAAAGGATGGCCCATCATCGGAAGTCTGCTAGACATGAGCATCGGTCTTGCTCACCGCAAGCTTGGATATCTGGCTCATCTTCATGGCGCCAAGAAGCTTATGGCCTTTAGCTTAGGCTCCACGCCCGCCGTTATTACATCGGATCCTGAAGTGGCACGGGAGCTGCTGAGCTCTCCTCATTTCGCCAACAGACCCCTCAAGCAATCTGCGCAGCAGTTGCTGTTTGGGAGAGCCATTGGTTTTGCCCCAAGTGGAGACTACTGGAAGTTGCTGAGGAGAATCTCTTCTGCTCACCTTTTTGCTCCTCGCAGAATTGCTGCACATGAAGCTGGACGCCAAGCTGATGCTGTTGAAATGCTTGTCAAAATCCAAAATGAGCATCAGTCTAATGGGGTTGTTAGGCTTAGAGGGCATCTCCAAGGAGCTGCTCTGAACAATATCATGGGGAGCGTTTTTGGAAGGAGGTTTGATATGAGTTCTGAAAGTGAAGAAGTCAAAAACCTGCGGGCAATGGTGGATGAGGGGTTTCAACTGCTGGGAGCTTTTAACTGGGCTGATCATCTCCCATGGCTGCGAATTCTTGATCCTCTTCGTATTCATGCTCGCTGTGCCAAGCTTGTGCCACGGGTGAAAAGCTTTGTTAGAAATATTATCCAAGAGCACAGGCAGAGCCCGCGCAAGGAGAGCAGCGCAGATTCTGATTTTGTTGATGTTTTACTTTCGCTGCAGGGTGAAGATAAGCTTGACGAGGAGGACATGATTGCAGTACTATGGGAAATGATTTTTCGTGGTACCGACACGACGGCTTTGCTCACAGAGTGGGCCATGGCGGAGCTGGTGCTGAATCCTGAAGCTCAGAAGAAAGCCCAGGCAGAGCTGGACCAAGTAGTCGGGCGTGAACGAAGCGTTAGGGATGAGGATATTCCGAAGCTACCGTATCTCCAAGCGGTGGTGAAAGAGACTTTACGAATGCATCCGCCTGGTCCCCTTTTGTCATGGGCCCGTCTGTCAACTGATGATGTGGACATGGCCGGTGGATTGTGTGTTCCAGCCGGTACGACTGCCATGGTGAATATGTGGTCGATTACTCACGACCCTCAGATTTGGGAATCGCCGAACGAGTTTCGCCCCAAGAGGTTCGTCGAGGCGGAGGGTGGGAAAAACGTCGATGTTAGGGGGAACGATTTGAGGCTTGCGCCTTTCGGTGCAGGTCGTCGAGTCTGCCCTGGGAAGGCTCTGGGTCTCGCCACTGTGAATCTCTGGGTGGCCAAATTGCTGCATCATTTTGAATGGATTCCTAGTGCTGAACGTCCGGTTGATTTGTCCGAGGTCCTTAAGTTGTCCTGCGAAATGGCTAATCCTCTCTACTGTGTTCCCGTCATCAGGGTGCCTTTCTATAAGTCATCGATTTAGCTAGCCGTAACACCAGCTAACCTTAATAGCAGCAATAGTACTCTTTGAATTTTGCCTCGTATCTTCGGTTATGTATGTATTTTGATGTGCAAGTAGTAGATTTTGTTATCCACCGTATGCGACTACTTGGCTCTGTTATACGCCCAGTTACAGGTAGCTGAAGGATCGAAAGAATGACGTGTCGTTTTGGGTGTTCAGTCGGTTTGCTTTATGATGATGTCGGTTTTGGTTTCGATTTTTGTTGTGCTCTGCACATTGAGATCCATTTTCGTAAATTCTCTGGTTATAGTTATACCTGTAATGAGCGCCACCGCGGCAGTTTTGATATATTTGCCTTGAAATGTAGCGAGCATGTATACATATATATATGGCAATAAAATATTTTGAGTTGTAACAAAA

Ace file of the UniGene sp_v1.1_unigene21139

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	76%
FL-Next	sp=Cytochrome P450 78A4; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	79%
Blast2go	cytochrome p450	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	75%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	75%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65012

Fln msg:

Fln protein: MENHGSSAGGGWWLYFLLFRNGCSRFSLDSDDVCGWRQWHLYIALLIAAVSAVLASWLIPGGCAWAGRRRRSGGVPIPGPKGWPIIGSLLDMSIGLAHRKLGYLAHLHGAKKLMAFSLGSTPAVITSDPEVARELLSSPHFANRPLKQSAQQLLFGRAIGFAPSGDYWKLLRRISSAHLFAPRRIAAHEAGRQADAVEMLVKIQNEHQSNGVVRLRGHLQGAALNNIMGSVFGRRFDMSSESEEVKNLRAMVDEGFQLLGAFNWADHLPWLRILDPLRIHARCAKLVPRVKSFVRNIIQEHRQSPRKESSADSDFVDVLLSLQGEDKLDEEDMIAVLWEMIFRGTDTTALLTEWAMAELVLNPEAQKKAQAELDQVVGRERSVRDEDIPKLPYLQAVVKETLRMHPPGPLLSWARLSTDDVDMAGGLCVPAGTTAMVNMWSITHDPQIWESPNEFRPKRFVEAEGGKNVDVRGNDLRLAPFGAGRRVCPGKALGLATVNLWVAKLLHHFEWIPSAERPVDLSEVLKLSCEMANPLYCVPVIRVPFYKSSI*

Protein Length: 552

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGCTCATATCTCTGCCTTCTTGCTGCTGCTTAGTTTTTGTATTTGCCATCCATTTGTGAG_-_ATGGAGAATCACGGGAGCTCTGCAGGAGGCGGGTGGTGGCTCTATTTCCTCCTCTTTAGAAATGGTTGCAGTCGTTTCTCGTTGGACTCCGACGATGTTTGTGGGTGGCGTCAGTGGCATCTTTATATTGCACTGCTTATTGCTGCTGTATCTGCTGTTTTGGCCTCCTGGTTGATCCCGGGAGGCTGTGCGTGGGCGGGGAGACGCAGGAGGTCGGGCGGCGTACCCATTCCTGGTCCCAAAGGATGGCCCATCATCGGAAGTCTGCTAGACATGAGCATCGGTCTTGCTCACCGCAAGCTTGGATATCTGGCTCATCTTCATGGCGCCAAGAAGCTTATGGCCTTTAGCTTAGGCTCCACGCCCGCCGTTATTACATCGGATCCTGAAGTGGCACGGGAGCTGCTGAGCTCTCCTCATTTCGCCAACAGACCCCTCAAGCAATCTGCGCAGCAGTTGCTGTTTGGGAGAGCCATTGGTTTTGCCCCAAGTGGAGACTACTGGAAGTTGCTGAGGAGAATCTCTTCTGCTCACCTTTTTGCTCCTCGCAGAATTGCTGCACATGAAGCTGGACGCCAAGCTGATGCTGTTGAAATGCTTGTCAAAATCCAAAATGAGCATCAGTCTAATGGGGTTGTTAGGCTTAGAGGGCATCTCCAAGGAGCTGCTCTGAACAATATCATGGGGAGCGTTTTTGGAAGGAGGTTTGATATGAGTTCTGAAAGTGAAGAAGTCAAAAACCTGCGGGCAATGGTGGATGAGGGGTTTCAACTGCTGGGAGCTTTTAACTGGGCTGATCATCTCCCATGGCTGCGAATTCTTGATCCTCTTCGTATTCATGCTCGCTGTGCCAAGCTTGTGCCACGGGTGAAAAGCTTTGTTAGAAATATTATCCAAGAGCACAGGCAGAGCCCGCGCAAGGAGAGCAGCGCAGATTCTGATTTTGTTGATGTTTTACTTTCGCTGCAGGGTGAAGATAAGCTTGACGAGGAGGACATGATTGCAGTACTATGGGAAATGATTTTTCGTGGTACCGACACGACGGCTTTGCTCACAGAGTGGGCCATGGCGGAGCTGGTGCTGAATCCTGAAGCTCAGAAGAAAGCCCAGGCAGAGCTGGACCAAGTAGTCGGGCGTGAACGAAGCGTTAGGGATGAGGATATTCCGAAGCTACCGTATCTCCAAGCGGTGGTGAAAGAGACTTTACGAATGCATCCGCCTGGTCCCCTTTTGTCATGGGCCCGTCTGTCAACTGATGATGTGGACATGGCCGGTGGATTGTGTGTTCCAGCCGGTACGACTGCCATGGTGAATATGTGGTCGATTACTCACGACCCTCAGATTTGGGAATCGCCGAACGAGTTTCGCCCCAAGAGGTTCGTCGAGGCGGAGGGTGGGAAAAACGTCGATGTTAGGGGGAACGATTTGAGGCTTGCGCCTTTCGGTGCAGGTCGTCGAGTCTGCCCTGGGAAGGCTCTGGGTCTCGCCACTGTGAATCTCTGGGTGGCCAAATTGCTGCATCATTTTGAATGGATTCCTAGTGCTGAACGTCCGGTTGATTTGTCCGAGGTCCTTAAGTTGTCCTGCGAAATGGCTAATCCTCTCTACTGTGTTCCCGTCATCAGGGTGCCTTTCTATAAGTCATCGATTTAG___CTAGCCGTAACACCAGCTAACCTTAATAGCAGCAATAGTACTCTTTGAATTTTGCCTCGTATCTTCGGTTATGTATGTATTTTGATGTGCAAGTAGTAGATTTTGTTATCCACCGTATGCGACTACTTGGCTCTGTTATACGCCCAGTTACAGGTAGCTGAAGGATCGAAAGAATGACGTGTCGTTTTGGGTGTTCAGTCGGTTTGCTTTATGATGATGTCGGTTTTGGTTTCGATTTTTGTTGTGCTCTGCACATTGAGATCCATTTTCGTAAATTCTCTGGTTATAGTTATACCTGTAATGAGCGCCACCGCGGCAGTTTTGATATATTTGCCTTGAAATGTAGCGAGCATGTATACATATATATATGGCAATAAAATATTTTGAGTTGTAACAAAA

Fln Alignment:

sp_v1.1_unigene21139___MENHGSSAGGGWWLYFL-LFRNGCSRFSL--DSDDVCGWRQWHLYXXXXXXXXXXXXXXWLIPGGCAWAGRRRRSXXXXXXXXXXXXXXXSLLDMSIGLAHRKLGYLAHLHGAKKLMAFSLGSTPAVITSDPEVARELLSSPHFANRPLKQSAQQLLFGRAIGFAPSGDYWKLLRRISSAHLFAPRRIAAHEAGRQADAVEMLVKIQNEHQSNGVVRLRGHLQGAALNNIMGSVFGRRFDMSSESEEVKNLRAMVDEGFQLLGAFNWADHLPWLRILDPLRIHARCAKLVPRVKSFVRNIIQEHR-QSPRKESSADSDFVDVLLSLQGEDKLDEEDMIAVLWEMIFRGTDTTALLTEWAMAELVLNPEAQKKAQAELDQVVGRERSVRDEDIPKLPYLQAVVKETLRMHPPGPLLSWARLSTDDVDMAGGLCVPAGTTAMVNMWSITHDPQIWESPNEFRPKRFVEAEGGKNVDVRGNDLRLAPFGAGRRVCPGKALGLATVNLWVAKLLHHFEWIPSAERPVDLSEVLKLSCEMANPLYCVPVIRVPFYKSS
O65012_______________MENRRSSGGSGWWVCVLPLFTKDGPAYFLHSSSDDVSAWRQWPLYIALLIVAVCAVLVSWLSPGGCAWAGRHKRGRVAIPGPKGWPIIG-SLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLLGAFNWADHLPWLRPLDPLRIHARCARLVPRVTTFVSNIIEQHRREEQRRESGDQCDFVDVLLSLQGEDKLDEEDMIAVLWEMIFRGTDTTALLTEWTMAELVLHPEAQKKAQAELDAVVGHDRSVKDSDIPKLPYIQAVVKEALRMHPPGPLLSWARLSTEDVNMGDGMCVPAGTTAMVNMWSITHDPNIWESPYEFRPERFVVFEGGEEVDVRGNDLRLAPFGAGRRVCPGKALGLATVNLWVAKLLHHFEWLPHAEHPVDLSEVLKLSCEMARPLHCVPVTRVPFAKFS

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
212	22			77	0.999999
216	90	10			0.90298
217			10	90	0.90298
221	90	10			0.90298
222		90		10	0.90298
225		90	10		0.90298
226		10		90	0.90298
228	90		10		0.90298
230		10		90	0.90298
231	10		90		0.90298
234		10	90		0.90298
235	10	90			0.90298
296	16	83			0.994512
302		16	83		0.994512
376		20		80	0.995493
730		42		57	1.0
763	16		83		0.994512
833		85		14	0.993533
953	14	85			0.993533
954		85		14	0.993533
955	85		14		0.993533
956		85	14		0.993533
957		14	85		0.993533
1048	83		16		0.999991
1078		83		16	0.999991
1321		14		85	0.993533
1348	33			66	1.0
1492	71		28		1.0
1581	14	85			0.993533
1584			14	85	0.993533
1629		85	14		0.993533
1631	85	14			0.993533
1638	85		14		0.993533
1639	85	14			0.993533
1640		85		14	0.993533
1645	14		85		0.993533
1646		14	85		0.993533
1648		14		85	0.993533
1649	14		85		0.993533
1668	88	11			0.923564
1673	11			88	0.923564
1677			88	11	0.923564
1678		88	11		0.923564
1680	88	11			0.923564
1681	88			11	0.923564
1682	88		11		0.923564
1684		11	88		0.923564
1685	11		88		0.923564
1689	88	11			0.923564
1707		80		20	0.999996
1711		80	20		0.999996
1713		20		80	0.999996
1715	80			20	0.999996
1718		10	90		0.90298
1720	10		90		0.90298
1721		90		10	0.90298
1788			7	92	0.999999
1790		7		92	0.999999
1792	92		4		0.98868
1794		7		92	0.999999
1795		4		95	0.997494
1799		95	4		0.997494
1805	95	4			0.994598
1806	4			95	0.994598
1809		4		95	0.994598
1810	4	95			0.994598

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain