SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21129

Length: 538 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21129
CGTCGTGACCTTGGCTGTCACTCAAAGGACGCACGCAACAATACAAATGTTATATTAAAATCCAATTTTTATATTCAGATTCTGAAATGCCGGGACCCAGTTATCACCAGTTACAGTATTTCAGCATGCTCACTAATTCTATACATTGCGTTCTGTTACCACTTATGGAGCGCCCGCAGTCTAATTCTAGCTCTGTAATCAGTTCTGGATCGCCTGATAGATTCCTCAGCCATATCTGTGGATTGCACTGAATAGTGAAAAAGTTGGATTTTGCAGAAAAGATGGAGATCGTGAACGTTTCCGAATATGAAGCTTTGGCCAAGGAAAAGTTGCCCAAAATGGTATTCGACTATTATGCTTCCGGTGCTGAAGATCAATGGACTCTCCAGGAAAATCGCAGGGCTTTTGAAAGAATAAGGTTCCGACCTCGCGTTCTAGTGGATGTATCAGAAATAGATATGAGTACTACTGTGCTGGGATTTAAGATATCAATGCCTATTATGATTGCTCCAACAGCCATGCAAAAGATGGCTCATCC

Ace file of the UniGene sp_v1.1_unigene21129

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15]	-	-	2.0e-28	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	glycolate oxidase	-	-	7.2267e-30	94%

Source	ECs	Term	Type	e value	Identity
AutoFact	(S)-2-hydroxy-acid oxidase.	EC:1.1.3.15	-	2.0e-28	74%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glyoxylate and dicarboxylate metabolism	00630		2.0e-28	74%
AutoFact	Metabolic pathways	01100		2.0e-28	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	glycolate oxidase activity	GO:0008891	Molecular Function	7.2267e-30	94%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	7.2267e-30	94%
Blast2go	peroxisome	GO:0005777	Cellular Component	7.2267e-30	94%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	7.2267e-30	94%
Blast2go	membrane	GO:0016020	Cellular Component	7.2267e-30	94%
Blast2go	nucleus	GO:0005634	Cellular Component	7.2267e-30	94%
Blast2go	apoplast	GO:0048046	Cellular Component	7.2267e-30	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FMN-dependent dehydrogenase	IPR000262	-	7.2267e-30	94%
Blast2go	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	7.2267e-30	94%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	7.2267e-30	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLU2

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 85 - 236

Fln protein: MEIVNVSEYEALAKEKLPKMVFDYYASGAEDQWTLQENRRAFERIRFRPRVLVDVSEIDMSTTVLGFKISMPIMIAPTAMQKMAH

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGACGCACGCAACAATACAAATGTTATATTAAAATCCAATTTTTATATTCAGATTCTGAAATGCCGGGACCCAGTTATCACCAGTTACAGTATTTCAGCATGCTCACTAATTCTATACATTGCGTTCTGTTACCACTTATGGAGCGCCCGCAGTCTAATTCTAGCTCTGTAATCAGTTCTGGATCGCCTGATAGATTCCTCAGCCATATCTGTGGATTGCACTGAATAGTGAAAAAGTTGGATTTTGCAGAAAAG_-_ATGGAGATCGTGAACGTTTCCGAATATGAAGCTTTGGCCAAGGAAAAGTTGCCCAAAATGGTATTCGACTATTATGCTTCCGGTGCTGAAGATCAATGGACTCTCCAGGAAAATCGCAGGGCTTTTGAAAGAATAAGGTTCCGACCTCGCGTTCTAGTGGATGTATCAGAAATAGATATGAGTACTACTGTGCTGGGATTTAAGATATCAATGCCTATTATGATTGCTCCAACAGCCATGCAAAAGATGGCTCATCC

Fln Alignment:

sp_v1.1_unigene21129___MEIVNVSEYEALAKEKLPKMVFDYYASGAEDQWTLQENXXXXXXXXXXXXVLVDVSEIDMSTTVLGFKISMPIMIAPTAMQKMAH
A9NLU2_______________MEIVNVSDYEVVAKQKLPKMVFDYYASGAEDQWTLHENRKAFERIRFRPRILIDVTKVDLSTTVLGFKISMPIMIAPTAMQKMAH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
168	37	62			1.0
172	75		12		0.975346
173			37	62	1.0
174		62	37		1.0
250	75	25			1.0
271	75		25		1.0
386		18		81	0.999994
450		14		85	0.993533
516	85		14		0.993533
521		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain