SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21091

Length: 1689 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene21091 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO	-	-	46%
FL-Next	sp=Probable lysine-specific demethylase JMJ14; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	jumonji domain protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FY-rich, C-terminal	IPR003889	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8GUI6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 108 aas, putative chimeric sequence, your sequence is shorter than subject: 293 - 954

Fln protein: IGRFSMHGREQLIVLKPENTKVCTMGESHTKHFDFMSGKDYSVGSGWKSNASIHPTFSENVSTQVGSSQTFSATQLQGLLPEGSDKSPGDSVDLRSAGNTAVTVNFHPSKAYTSMATDTLDMNMINGSDFSFNHMSNERKAQSVFVSSSSAGTFNSAKLIQNKGPRIAKFAHVQKSSYDVELIAIGVMCPDKPWHNSQTIFPKGFKSRVKFYSVVDPTQMCYYVSEVLDACHVGPLFKVIMEGCSTEVFIQDSVYKCWELVQEEVESRNYETAQPWQTKSSCFAASREPKWS*

Protein Length: 294

Fln nts: AATTGGTAGGTTCTCCATGCATGGTAGAGAACAGCTTATTGTTTTAAAGCCAGAAAACACAAAAGTATGTACAATGGGTGAAAGCCATACTAAACACTTTGACTTCATGAGTGGGAAAGATTACTCTGTTGGATCAGGCTGGAAAAGTAATGCAAGTATACATCCAACCTTTTCAGAAAATGTTTCAACTCAGGTGGGCTCTTCTCAAACATTTTCGGCAACACAGCTGCAAGGTTTATTACCTGAAGGAAGTGATAAGTCTCCAGGAGATTCCGTCGATTTAAGATCTGCAGGCAACACCGCTGTCACTGTGAATTTCCATCCTTCCAAGGCATATACCAGCATGGCAACCGACACTCTGGATATGAACATGATTAATGGATCAGACTTTTCTTTCAATCACATGAGCAATGAAAGAAAAGCCCAATCTGTATTTGTATCAAGTTCTTCAGCTGGAACATTCAATTCAGCAAAGTTAATCCAGAACAAGGGTCCTCGCATTGCTAAGTTTGCCCATGTTCAGAAAAGCAGTTATGATGTTGAACTCATAGCTATTGGAGTTATGTGTCCTGACAAGCCCTGGCACAACAGCCAGACAATATTTCCCAAAGGGTTTAAAAGCCGGGTGAAATTCTACAGTGTTGTAGATCCAACACAGATGTGCTATTATGTTTCGGAAGTTCTGGATGCTTGTCATGTTGGACCTCTGTTCAAGGTTATAATGGAGGGATGCTCGACAGAAGTTTTTATACAAGATTCAGTTTACAAGTGCTGGGAACTTGTGCAAGAGGAGGTTGAATCAAGAAATTATGAGACAGCGCAGCCTTGGCAAACAAAATCTTCCTGCTTTGCAGCCTCCAGGGAGCCTAAATGGTCTTGA___TATGTTTGGGTTTACCTCACCTTTGGTCATTAAGGCCATAGAGGAACTTGTTCGTGATCACAAATGTGAAGAATATTGGTGCAGAAGGCCAAGCAATGCAAGTAAGAGACAGTATCCTGAGACGAATGATATATGTGAGAAACATTACAAAACTTCAAACTTTCAAAGCGGTGGTCAATCCAACCCTGCAGTGTTGAAGAATTTTCTGGAGGAGATTGATAACAGGGGCAAATCAAGCATAGTCAACCTGCAGCAAGCGGAATCAAACCCTCTAAATCTTACATCACCTGAAAAAATATATATGGTTCTTAAGGGTTTTTTCAGAAAAGCAAATCCCGATGAACTACGAACATTGCATAAAGTTTTGAGTGATGAATCGTGGAGCACAAATTGGAGGGGAGCACTTCGGGCTCTTGTAGAAGAGCTTCAAAATATGTGAATATAAAAAACCTAATTTTGGGCTTTTGGATTTTTCTTTACCAAGAGGCCCCCACTCAAATGAGTCTCAAGTACTTTGTATATCTAACCATCCATCATTTAGCATTCTTTCATCAGCATGCAGCTGCTCCTTGTTAAGCAATTTTAACATTGGAATGTCATTGCTTTTCAAATAGGCTCTGGGTAGATCTTGCCCCTTCATTGTTTCTCCACATGGAGATATGACAAATCCGAGGATAAATGATAATATCTTGAGAGGAGTTGAAATCAATTTCAAAAGATCTTTACATGTATTATATGTTTTTGTAAAATAGTCACGGAGTGCTCATGATGAGCACTTTAGTCTTAGAGGTTTTTTTACTATTGATTGT

Fln Alignment:

sp_v1.1_unigene21091___SDKSPGDSVDLRSAGNTAVTVNFHPSKA-YTSMATD---TLDMNMINGSDFSFNHMSNERKAQSVFVSSSSAGTFNSAKLIQNKGPRIAKFAHVQKSSYDVELIAIGVMCPDKPWHNSQTIFPKGFKSRVKFYSVVDPTQMCYYVSEVLDACHVGPLFKVIMEGCSTEVFIQDSVYKCWELVQEEVE
Q8GUI6_______________SDLTSNKEVQLKQDGDSDVNRHGHESERNHVHGITDKSAVTDVKLGVGGKFDEKKISVESQNPH---SVSDVGCSELAKKVDGCLGGKDQNAATNRLSLSVELLSSGSLVVKKLWCSKQAIYPKGFKSRVKFLSVLDPTNLTNYISEVLDAGLLGPLFRVSVEDYPTENFSNVSAEKCWQMVTQRLK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
511		9		72	0.999994
512	81		18		0.999994
514	72	9	18		0.999994
515	18	9		63	0.999997
516	9	18		72	0.999994
517	27			72	1.0
518			27	72	1.0
519		18	9	72	0.999994
520		18		81	0.999994
521	18	81			0.999994
526		15	84		0.999986
528		16		83	0.999991
532	83	16			0.999991
553		10	90		0.90298
555	10			90	0.90298
588		14	85		0.993533
589		14		85	0.993533
590		14		85	0.993533
901		85		14	0.993533
902		42		57	1.0
904	33			66	1.0
907		80		20	0.995493
1024	75		25		0.996473
1338	80		20		0.995493
1422		66		33	0.997452
1429		25		75	0.996473
1439	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain