SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21072

Length: 1491 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21072

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arabinogalactan-like protein n=1 Tax=Pinus taeda RepID=Q41072_PINTA	-	-	2.0e-31	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	fasciclin-like arabinogalactan protein	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAS1 domain	IPR000782	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A936

Fln msg:

Fln protein: MKNSTAVIQIVACLVLMVGIVGGSHSHGNVMVSLAAKKSHKLAPTPAPAPAPALANLTQLLSVAGPFNTLLSLLEASELLTTLQSQANNTEQGLTIFAPSDPAFSSLSKKTMANLTAQQKKAFLLAHCIPKFYTLADFQNFSNPANTMATGDNGGKYNLNITSKNGAVSVSSGYVNTPIASAVYSASPLALYMVGKVLLPEDIFGLPSPSPAPAPSPVSVPAPAPESSSPKGSTSNLPASTPAAGPSAHSAASFLSSQQSIYLILAVAAGSLLLL*

Protein Length: 277

Fln nts: ATGGGGAGTGCATCGTAATCATAATTTTAGTTTAATAATAAAAAAACATAACCTGATTTGTGTGGTTTCAGTATAAATTACCATCCTCAACTTTCATTCTCAAATCAAATCTGTCTCTGGGAAGTACAGTGTTGCTCAGTGGTTTCATCATCTTGTTCCAAGGATTGCATTGCAGCCAGCAAGCCCTCTGCATTTTTATTATTTGTGGTGGTGTGTCTGATCCAATCAGGGCGACA_-_ATGAAGAACAGTACTGCTGTTATCCAGATCGTTGCTTGTTTAGTCCTTATGGTGGGAATAGTGGGGGGTAGCCATAGTCATGGTAATGTCATGGTATCTCTGGCAGCTAAGAAATCTCACAAACTGGCCCCCACTCCAGCACCAGCACCAGCACCGGCACTAGCCAATCTGACACAACTGCTATCAGTAGCTGGGCCATTCAACACGTTATTGAGTCTCTTGGAAGCCAGTGAACTGCTTACGACTCTACAATCCCAGGCAAACAACACAGAGCAAGGTCTTACAATATTTGCACCATCTGATCCTGCATTCTCTTCTCTCTCAAAGAAAACAATGGCCAATCTGACAGCCCAGCAGAAGAAAGCATTTCTGTTGGCCCATTGCATTCCCAAGTTTTACACATTGGCAGATTTTCAGAACTTCAGCAACCCTGCCAATACAATGGCAACTGGCGACAATGGGGGTAAATACAATCTGAATATCACTTCAAAGAATGGGGCTGTGTCTGTGTCCTCTGGTTATGTGAACACACCAATTGCTAGCGCTGTATATTCCGCAAGCCCACTGGCACTTTACATGGTGGGAAAAGTTCTGCTCCCGGAAGACATATTTGGTCTTCCAAGTCCTTCTCCAGCCCCAGCACCCAGTCCTGTTTCAGTTCCCGCCCCTGCACCTGAAAGCTCATCTCCCAAAGGGTCTACCTCTAATTTACCAGCCAGTACTCCTGCCGCTGGCCCATCGGCCCACTCAGCTGCATCGTTTCTAAGTTCCCAACAATCCATTTATCTTATTCTGGCTGTAGCAGCTGGGTCGCTTCTGCTCTTATGA___AGCTGCCCAACAACCTGACACGCAGCGAAAAGGCAAACATCCGGATCTTGTGTGCACATCTGCTACTAGGAGGATGAGTGGCCCTCAAATTCAGATGAGATTTAAGTGTTTGCATCTAGTTGAGAGTTCAGTTAGTGGTGTGAATGATGAGATTTTCTACTATGTCATGTAAGTAAGACTCTTGAGATTTATGTACTCTATGCATTGGGTACTACAATGTCTTGTATTTTAATTATTATTTATGCCTGATTCATTCTCGTACTGAAACATGAAGTTTGAAACATTCAAATGCTGCTACGCAGCAGATTTTTCCATATTTGGTGGGTGAATAAAATCTATTGCCGCTTAATTTGAAAGCGCCTCTTCTCTTGGGCATGTAATTTATGCTTTGAAGTGTTTCCTTTCATCTACAATTTCAGGGGCTGAT

Fln Alignment:

sp_v1.1_unigene21072___MKNSTAVIQIVACLVLMVGIVGGSHSHGNVMVSLAAKKSHKXXXXXXXXXXXXXXXXXXXXSVAGPFNXXXXXXXXXXXXXXXQSQANNTEQGLTIFAPSDPAFSSLSKKTMANLTAQQKKAFLLAHCIPKFYTLADFQNFSNPANTMATGDNGGKYNLNITSKNGAVSVSSGYVNTPIASAVYSASPLALYMVGKVLLPEDIFGL
D5A936_______________MKNCTSVIQILACLVLMVGLVGGSHSYENAMVVLAAKKTPTLTPTPAPAPGPAFANLTDLLSVAGPFTNILSLFEGSDLMETLQSQANDRKQGPTLFAPSDLAFSPLSKKTLANLTAEQKKELLLAHCIPRFYTLTNFQNFSNPANTMATGSNGGKYNLNITAMGGAMTVSSGYVTTPIISTVHVTDPVALYTVGKILLPEDIFGL

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
83	50		25	25	0.995533
85		75	25		0.996473
86		50	50		1.0
87		25		75	0.996473
88		25		25	0.995533
89	25	25	50		0.995533
90	75			25	0.996473
93	25	25		50	0.995533
94		25		75	0.996473
96		75	25		0.996473
97	75		25		0.996473
98	25	25		50	0.995533
101		75	25		0.996473
106	75	25			0.996473
111	75		25		0.996473
226	80		20		0.995493
994	91		8		0.999807
999		11	7	80	1.0
1000	7		11	80	1.0
1001		89		10	1.0
1002			17	82	1.0
1003	85			14	1.0
1004	67	22	6	3	1.0
1005		16	83		1.0
1006		6		87	0.993531
1008		78	21		1.0
1009		75	15	9	1.0
1010		93		6	0.999153
1011	71			28	1.0
1012	68	3	9	18	1.0
1014	81	6		9	0.999999
1015	71	15	9	3	1.0
1017		84	3		1.0
1018	12	84	3		1.0
1019	93	6			0.999153
1020		6		90	0.997073
1022	3	6		90	0.997073
1028	91	8			1.0
1029			8	91	1.0
1034	8		91		1.0
1036		8		91	1.0
1037			91	8	1.0
1039	91		8		1.0
1042	91			8	1.0
1046		8	91		1.0
1047	8		91		1.0
1048		8	91		1.0
1051	8		91		1.0
1413		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
372	391	CCAGCA CCAGCA CCAGCA CC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain