SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21056

Length: 2270 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21056
ATGGGGAGCCTATATCTAGCTCTTTATCTCCAACGCTGAGGGAAGGTTCTGTAAATTCAGTGTGTAGACTCCCAGCTTGATGGCCGATGGCAAGAAAAAAATGGAAGAGAGAGGAGGCGGGGGGCTGGTGCAGCTTCCTGTGTGCATCCTACAGAGCATACTGAGCAAGCTCGATGTCCCCTCCATATGCTCAGCTGCCCGATCCTGCAAACTCTTGAGTCTGTGTGCATCCCACACTCTTTCAATCGTGGACTCTTTTCATCTCCTGGATCTTCCACCAACATCTGAAATGTTGCATCATTTACTTCCTCCCAATCTGGCACTTAAAAGTCTGAAAGTAGACTGTGCCCAACTTGGTGATTCATCCATTGGACATCTTGCCAACCCTCAACTGGAGGAGCTTTGTCTTCGGTGCTGTGACAATTTTACTGCTGAACTTTTATTTGAAATTGGAAGAAATTGCAAAAACCTACGATCATTGTCCCTGGAATTGGGTTGGCTCGATGAACGAGAGGACAGACCTAGGACTTTCATCCATAATGCTGGCCTTGAACAGTTGCTCAGAGGCTGCTCTCAGTTAGAATCTCTTTGCTTGACGTTTGATGGATCTTCATTTGATAATAGCAAGTTTGCTGCGATTTGGAGGTTGGCTGCACCAACCCTAAAAGTTCTGGAACTTGGCTACATACTAGCAGCAGATGCAAAAGAAATATTTAATTCCAAGATTTTAAGCTCGGGGGGCAACATTTTTGGTCACTCTACCCTTCAAATGCAAGAGCCTAAGAGCGTTGCTTTTCCAAACTTACAAAAGTTGTGTCTGGTTTTAGACTGGATCTCAGATTCGGTGGTAGGTGTTATTTCCAAAAATCTACCCTTCCTTATTCACCTTGACCTTCGAGATGAACCTATTGAAGAACCTCGTGCAGCTATGGACTTGACAAACTGGGGTATGCAACAAATCAGTAGTTGTTCAAAATTGCAGCATCTTTCATTGGTTCGTAGTCAAGAGGATTTTGCTATATCTTTTAGAAGGGTTAATGATCTTGGGATTCTTCTAATGGCTGAAAACTGCCCAAATCTGGAAAGTGTTAGACTTGGTGGTTTCTGCCGTATCACAGATGCAGGTTTTCGGGCTATTCTGCACCGATGTTCCAATTTGCAAAAGCTTGAGTTATTGCGCACAACTCAGCTAACGGATCTAGTATTTCATGATATTTCTGCAACTCCTCTCTCTCTAACTGATGTAAGCTTGATTTCTTGCACTTTGATTACTGACTTTTCCATTATACATTTGGCATACTGTAAGGATATACAAGTACTAGATTTGAAGGGTTGCAGGCGTGTTGGAGATGATGGATTGAAGGTTGTGTCATCACTTGGAAAATTAAAAACATTGCACTTGAATAGTTCAGATATCAGTGATGTTGGCTTATCCTATTTAGGAAGTGGCAATGCACCATTGGTATCACTTTCCTTAAGAAGCTGTCAAAGGTTAACTGACAAGGGAATATCTGCTTTAGTTGCAGGTTCCCTTGTTCAAACATTGCAAAATCTTGACTTGTCAAATATTCCAAACTTAACTGACAATGCAATTCTAGTTTTAGTCAAAAGTGGAATGCAGATTGTGGAACTTCGACTCCGGGAATGCCCTCTTATTGGTGATACATCTGTCATTGCTTTGGCATCAATGCATTTCCAAGGTCGAGGATATGGAAGCACACTAAGATTATTGGATATATATAATAGTGGTGGTATTACAAAACTTGCAATTTCATGGTTTAAAAAGCCTTATTTTTCAAGGTTGCGATGGTTAGGGATAGGATCGAATGTGAATGGATATATGGATGTTCTTGGAAGAAACCGGCCATTATTGCGAATATTATGGCAAGGAAATGAGTTGGATAGGGGTCGGCAGGACTTCTCAGATGAATTTTACAAGGTTGAGTTTGAGGAAGAAGATGAGCTTGAACAGTGGTTGCAAAATTTAGGTAATGAGGGTGAAGTTGAAGATGAAATTGGACAATGGATACAGGAAGGTGAGTAAGTATATCTGCTTTTTCTAACAGTTATTTCTGCTTGTAACAGAAATATCAATTTTATTGCACATTTATGATCTTACAAGACATTTGATCTCCAATAGCATTCAATTGTATGACAATTGTACCTATAAGTCACCATTAGTATCTTCTAGTGGTGGTCATTAGATTGAATATCATGTTTTGATTTTGCAACGTTGCAGATTTCAGTTCATCATTATTCCTTTAATAACG

Ace file of the UniGene sp_v1.1_unigene21056

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	f-box family protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV99

Fln msg: your sequence is longer than subject: 655 - 584

Fln protein: MADGKKKMEERGGGGLVQLPVCILQSILSKLDVPSICSAARSCKLLSLCASHTLSIVDSFHLLDLPPTSEMLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTAELLFEIGRNCKNLRSLSLELGWLDEREDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLAAPTLKVLELGYILAADAKEIFNSKILSSGGNIFGHSTLQMQEPKSVAFPNLQKLCLVLDWISDSVVGVISKNLPFLIHLDLRDEPIEEPRAAMDLTNWGMQQISSCSKLQHLSLVRSQEDFAISFRRVNDLGILLMAENCPNLESVRLGGFCRITDAGFRAILHRCSNLQKLELLRTTQLTDLVFHDISATPLSLTDVSLISCTLITDFSIIHLAYCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKTLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYMDVLGRNRPLLRILWQGNELDRGRQDFSDEFYKVEFEEEDELEQWLQNLGNEGEVEDEIGQWIQEGE*

Protein Length: 656

Fln nts: ATGGGGAGCCTATATCTAGCTCTTTATCTCCAACGCTGAGGGAAGGTTCTGTAAATTCAGTGTGTAGACTCCCAGCTTG_-_ATGGCCGATGGCAAGAAAAAAATGGAAGAGAGAGGAGGCGGGGGGCTGGTGCAGCTTCCTGTGTGCATCCTACAGAGCATACTGAGCAAGCTCGATGTCCCCTCCATATGCTCAGCTGCCCGATCCTGCAAACTCTTGAGTCTGTGTGCATCCCACACTCTTTCAATCGTGGACTCTTTTCATCTCCTGGATCTTCCACCAACATCTGAAATGTTGCATCATTTACTTCCTCCCAATCTGGCACTTAAAAGTCTGAAAGTAGACTGTGCCCAACTTGGTGATTCATCCATTGGACATCTTGCCAACCCTCAACTGGAGGAGCTTTGTCTTCGGTGCTGTGACAATTTTACTGCTGAACTTTTATTTGAAATTGGAAGAAATTGCAAAAACCTACGATCATTGTCCCTGGAATTGGGTTGGCTCGATGAACGAGAGGACAGACCTAGGACTTTCATCCATAATGCTGGCCTTGAACAGTTGCTCAGAGGCTGCTCTCAGTTAGAATCTCTTTGCTTGACGTTTGATGGATCTTCATTTGATAATAGCAAGTTTGCTGCGATTTGGAGGTTGGCTGCACCAACCCTAAAAGTTCTGGAACTTGGCTACATACTAGCAGCAGATGCAAAAGAAATATTTAATTCCAAGATTTTAAGCTCGGGGGGCAACATTTTTGGTCACTCTACCCTTCAAATGCAAGAGCCTAAGAGCGTTGCTTTTCCAAACTTACAAAAGTTGTGTCTGGTTTTAGACTGGATCTCAGATTCGGTGGTAGGTGTTATTTCCAAAAATCTACCCTTCCTTATTCACCTTGACCTTCGAGATGAACCTATTGAAGAACCTCGTGCAGCTATGGACTTGACAAACTGGGGTATGCAACAAATCAGTAGTTGTTCAAAATTGCAGCATCTTTCATTGGTTCGTAGTCAAGAGGATTTTGCTATATCTTTTAGAAGGGTTAATGATCTTGGGATTCTTCTAATGGCTGAAAACTGCCCAAATCTGGAAAGTGTTAGACTTGGTGGTTTCTGCCGTATCACAGATGCAGGTTTTCGGGCTATTCTGCACCGATGTTCCAATTTGCAAAAGCTTGAGTTATTGCGCACAACTCAGCTAACGGATCTAGTATTTCATGATATTTCTGCAACTCCTCTCTCTCTAACTGATGTAAGCTTGATTTCTTGCACTTTGATTACTGACTTTTCCATTATACATTTGGCATACTGTAAGGATATACAAGTACTAGATTTGAAGGGTTGCAGGCGTGTTGGAGATGATGGATTGAAGGTTGTGTCATCACTTGGAAAATTAAAAACATTGCACTTGAATAGTTCAGATATCAGTGATGTTGGCTTATCCTATTTAGGAAGTGGCAATGCACCATTGGTATCACTTTCCTTAAGAAGCTGTCAAAGGTTAACTGACAAGGGAATATCTGCTTTAGTTGCAGGTTCCCTTGTTCAAACATTGCAAAATCTTGACTTGTCAAATATTCCAAACTTAACTGACAATGCAATTCTAGTTTTAGTCAAAAGTGGAATGCAGATTGTGGAACTTCGACTCCGGGAATGCCCTCTTATTGGTGATACATCTGTCATTGCTTTGGCATCAATGCATTTCCAAGGTCGAGGATATGGAAGCACACTAAGATTATTGGATATATATAATAGTGGTGGTATTACAAAACTTGCAATTTCATGGTTTAAAAAGCCTTATTTTTCAAGGTTGCGATGGTTAGGGATAGGATCGAATGTGAATGGATATATGGATGTTCTTGGAAGAAACCGGCCATTATTGCGAATATTATGGCAAGGAAATGAGTTGGATAGGGGTCGGCAGGACTTCTCAGATGAATTTTACAAGGTTGAGTTTGAGGAAGAAGATGAGCTTGAACAGTGGTTGCAAAATTTAGGTAATGAGGGTGAAGTTGAAGATGAAATTGGACAATGGATACAGGAAGGTGAGTAA___GTATATCTGCTTTTTCTAACAGTTATTTCTGCTTGTAACAGAAATATCAATTTTATTGCACATTTATGATCTTACAAGACATTTGATCTCCAATAGCATTCAATTGTATGACAATTGTACCTATAAGTCACCATTAGTATCTTCTAGTGGTGGTCATTAGATTGAATATCATGTTTTGATTTTGCAACGTTGCAGATTTCAGTTCATCATTATTCCTTTAATAACG

Fln Alignment:

sp_v1.1_unigene21056___MLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTAELLFEIGRNCKNLRSLSLELGWLDEREDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLAAPTLKVLELGYILAADAKEIFNSKILSSGGNIFGHSTLQMQEPKSVAFPNLQKLCLVLDWISDSVVGVISKNLPFLIHLDLRDEPIEEPRAAMDLTNWGMQQISSCSKLQHLSLVRSQEDFAISFRRVNDLGILLMAENCPNLESVRLGGFCRITDAGFRAILHRCSNLQKLELLRTTQLTDLVFHDISATPLSLTDVSLISCTLITDFSIIHLAYCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKTLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYMDVLGRNRPLLRILWQGNELDRGRQDFSXXXXXXXXXXXXXXXQWLQNLGNEGEVEDEIGQWIQEGE
A9NV99_______________MLHHLLPPNLALKSLKVDCAQLGDSSIGHLANPQLEELCLRCCDNFTADLLFEIGRNCKNLRSLSLELGWLDEPEDRPRTFIHNAGLEQLLRGCSQLESLCLTFDGSSFDNSKFAAIWRLVAPTLKVLELGYILATDAKEIFNSKIFSPGGNIFGHSTLQMQEQKSTAFPNLQKLCLVLDWISDSVVGVISKNLPFLIELDLRDEPIEEPRAAVDLTNWGIQQISSCSKLRHLSLVRSQEDFAISFRRVNDLGILLMAENCSNLESIRLGGFCRITDASFRAILHRCSNLQKLELLRMTQLTDLVFHDISATPLSLTDVSLISCSLITDFSIIHLAHCKDIQVLDLKGCRRVGDDGLKVVSSLGKLKLLHLNSSDISDVGLSYLGSGNAPLVSLSLRSCQRLTDKGISALVAGSLVQTLQNLDLSNIPNLTDNAILVLVKSGMQIVELRLRECPLIGDTSVIALASMHFQGRGYGSTLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGIGSNVNGYVDVLGRDRPLLRILWQGNELDRGRQDFSDEFYKVEFEEEDELEQWLQNLGNEGEVEEEIGQWIQEGE

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
930	20	80			0.995493
932	80		20		0.995493
933			20	80	0.995493
984	85			14	0.993533
990		14		85	0.993533
991		14		85	0.993533
992	14			85	0.993533
1012		12	87		0.992554
1016		12		87	0.992554
1017			12	87	0.992554
1021		12		87	0.992554
1022	75		12	12	0.975346
1024	87		12		0.992554
1025			12	87	0.992554
1028			12	87	0.992554
1030		12		75	0.975346
1032		12	87		0.992554
1033	87			12	0.992554
1034	87	12			0.992554
1035	12		87		0.992554
1082	11	88			0.923564
1086	88		11		0.923564
1312		83		16	0.994512
1317	83		16		0.994512
1498		10		90	0.90298
1499	90		10		0.90298
1500	90			10	0.90298
1506	90	10			0.90298
1507	90			10	0.90298
1508			90	10	0.90298
1511	90	10			0.90298
1512	90			10	0.90298
1541		10		90	0.90298
1740	88		11		0.999937
1853			21	78	1.0
1923			33	66	0.997452
1927		66	33		0.997452
1929		33	66		0.997452
1930	66	33			0.997452
1933	66		33		0.997452
1934	66	33			0.997452
1936			33	66	0.997452
1938		33		66	0.997452
1941	66			33	0.997452
1942	66	33			0.997452
1943	33		66		0.997452
2154		25		75	0.996473
2172	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain