SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21042

Length: 2285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21042
CGTCGTGACCTTGGCTGTCACTCAAATTTCTGTCCAAGTTACTATGCCACGTCATACTCCTACCAAGGTCGCCAAAATAGGGTTCACTCAGCTACCAAGGTGGGATCCCTCGTTCAGACACCAAAATAGGGTTCACTCGCTGCCAAGGCTCGCTATATCTAGTTTAATATCGGCTCATTTGAGGGGCTGGGTTCTTAATCGGGACGGTACGCTTCAAAATTTCATTTTCTCTCGCTGGTGGTTTAAAGCTTTAAGACCTTATCGACCGTATCTGAAACCCTACACATTTGCATCAAATATCTGCAGTGCAGTGCGAGGCGTGTGCATGGACTGTCGAAGCACCGGCCAACCCTCATGAAGGGAGAACCCTGAGCACGCGCGTCTGGAGTTCGAAAACCACAATGCGAAATTCCGTCTGAAGCAGGTGCGAAAACCCTTCTAACCCCAATATTCTGTTTCCATTGAAGTTTATCTCTTAACGGCAGCAGCCGCCACGGCAGCAGTCGCCATGGGCAAGAAGAAGAAAGCAAGATTTCGAGAATCCAAAGAATCCGAAGAGGAAATCGAAAAATCCCCAGAACCCAAAAAGACCGGTTTGGACCCTTTATTGTATCCCCCAACGATGCCGATTGAAATGGTTGTGAGCAACATTCTGAAGCAACCGCCTCTGATGGGCGTTGAAAACGCATTGAACCAGTTGGGGTTTGGGGTTTCAGTCCAGTTTGTGGAGGATGTGCTCAAAATGTCCTACGGGGCCGGCATGGATGCCTTGAAGTTTTTCCGTTGGGCTGGGTTGAAGCTTGGCAGGAAGCACAGCCCCCTCGCGTGGAATTTGCTCGTGGATTTGCTGGGCAAAGAAAAATTGTTTGACGCGATGTGGGACTGCGTTAAGATAATGAGGACCGAGGGCATCGTGTCCATGCAAACCTTTTCCTCTATTTTTGGGAATTATGCGCAGGCCGGTAAGATTGAGGAGACGAGGATGACGTTCGATGTGCTGGAGCAGTATGGATGCCGGAAGGATGTCGTCGCGCTAAATTGTTTTCTCAGTGCGTTGTGTAGGTACAATCAGGTGAAGTCGGCCGTAGAATTCTTCGATATTATGAAGGATAAAATCACCCCAAATGCTGACACGTATGCGTTGCTGCTGGAGGGATTGGAGAATGAAGGTAATGTGAGCAAGGCTAAAACTACCTTTGGGGAAATGATCATCCGCGTCGGATGGCTGGCGGGCAACACAGCGGCTTATAATGCCTTCTTGACCAATCTCGTCAATTGTTCTCAAGTCGAAGAGGCATTGAAGTTTCTGCACGTAATGAAGACTAAGAAGTGTTTTCCCGATCTGAGCTTCTTCTGTAATACGCTTCAAATCCTTTACCAGCGCAAGGACACGAAGTATGCTTTTCCCTTGTGGGAGATGATGAAGCAAAGTGGTATGGCCCCTGATTTGCCCACTTATAATGCAATGGTTGGCGTGTGTTGCTGTGCAACGCCGAGCCAGGTAGAATTTGCTTACCGTCTCTTGGATGAGATGGTTTTTAATGGCGCCTTTCCTGATTCTAATACTTACAATGCTATTTTTGAAGCTCTTATCACTGTCCGCGACGTGGAGGCGGCCTCGAGCATTTTCCGAGAAATGACTAGGAATCAATGTTATCCTGTCTATGCTAATTATGTTATGGCAATGAAAATGTTTTTTGAAGCAGATGATCCAGATATGGCTGTAATGATGTGGAGACAGATGATACAGAAGTCCATTTTCCCAAAATCAGACTGCGCTGCAGTGTTAATTGAAGGGCTTTGTGACCTACGAAGAGTATCAGAAGCACTAAAATATTCTCTGGAGGCATTTAACAGAGGATTGCAAATACCAGTTGAAACTATGACAAAGTTGAAGAATGCTTCTATACAAGCAGGCAGGCGAGGTGCATACGAACAACTTGAAAAAAAATAAAAGGTATTTTAAGTTAGGCCAAGTAATCACCAATGTTTAAGTGTTCTAAGTCAGTCCCCTTGAGGGGGAGAGCTGCAGGCAGTGTTTACTGTGGCAGCTTGGTTCCCATTTCTTGCGGTGGTTATTAGGGAATTTCAAAATCCCAGAGGATTTTGACTGAGGCAGTAAACATGAAGTTCAGCAATGGGATAAGCTTCTCTCATCTTTGCTCGAAGACTGGTTTCTTTTGGTAGCTATTCATACTCTGCAATGAGTAACTCTGTGTCTTAGGGCATCATTTATCTTCATTGAAAAACATCCTGGACATTTTTGTTATATATTTTCTCTTTTT

Ace file of the UniGene sp_v1.1_unigene21042

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	pentatricopeptide repeat-containing	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 482 - 524

Fln protein: MGKKKKARFRESKESEEEIEKSPEPKKTGLDPLLYPPTMPIEMVVSNILKQPPLMGVENALNQLGFGVSVQFVEDVLKMSYGAGMDALKFFRWAGLKLGRKHSPLAWNLLVDLLGKEKLFDAMWDCVKIMRTEGIVSMQTFSSIFGNYAQAGKIEETRMTFDVLEQYGCRKDVVALNCFLSALCRYNQVKSAVEFFDIMKDKITPNADTYALLLEGLENEGNVSKAKTTFGEMIIRVGWLAGNTAAYNAFLTNLVNCSQVEEALKFLHVMKTKKCFPDLSFFCNTLQILYQRKDTKYAFPLWEMMKQSGMAPDLPTYNAMVGVCCCATPSQVEFAYRLLDEMVFNGAFPDSNTYNAIFEALITVRDVEAASSIFREMTRNQCYPVYANYVMAMKMFFEADDPDMAVMMWRQMIQKSIFPKSDCAAVLIEGLCDLRRVSEALKYSLEAFNRGLQIPVETMTKLKNASIQAGRRGAYEQLEKK*

Protein Length: 483

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTCTGTCCAAGTTACTATGCCACGTCATACTCCTACCAAGGTCGCCAAAATAGGGTTCACTCAGCTACCAAGGTGGGATCCCTCGTTCAGACACCAAAATAGGGTTCACTCGCTGCCAAGGCTCGCTATATCTAGTTTAATATCGGCTCATTTGAGGGGCTGGGTTCTTAATCGGGACGGTACGCTTCAAAATTTCATTTTCTCTCGCTGGTGGTTTAAAGCTTTAAGACCTTATCGACCGTATCTGAAACCCTACACATTTGCATCAAATATCTGCAGTGCAGTGCGAGGCGTGTGCATGGACTGTCGAAGCACCGGCCAACCCTCATGAAGGGAGAACCCTGAGCACGCGCGTCTGGAGTTCGAAAACCACAATGCGAAATTCCGTCTGAAGCAGGTGCGAAAACCCTTCTAACCCCAATATTCTGTTTCCATTGAAGTTTATCTCTTAACGGCAGCAGCCGCCACGGCAGCAGTCGCC_-_ATGGGCAAGAAGAAGAAAGCAAGATTTCGAGAATCCAAAGAATCCGAAGAGGAAATCGAAAAATCCCCAGAACCCAAAAAGACCGGTTTGGACCCTTTATTGTATCCCCCAACGATGCCGATTGAAATGGTTGTGAGCAACATTCTGAAGCAACCGCCTCTGATGGGCGTTGAAAACGCATTGAACCAGTTGGGGTTTGGGGTTTCAGTCCAGTTTGTGGAGGATGTGCTCAAAATGTCCTACGGGGCCGGCATGGATGCCTTGAAGTTTTTCCGTTGGGCTGGGTTGAAGCTTGGCAGGAAGCACAGCCCCCTCGCGTGGAATTTGCTCGTGGATTTGCTGGGCAAAGAAAAATTGTTTGACGCGATGTGGGACTGCGTTAAGATAATGAGGACCGAGGGCATCGTGTCCATGCAAACCTTTTCCTCTATTTTTGGGAATTATGCGCAGGCCGGTAAGATTGAGGAGACGAGGATGACGTTCGATGTGCTGGAGCAGTATGGATGCCGGAAGGATGTCGTCGCGCTAAATTGTTTTCTCAGTGCGTTGTGTAGGTACAATCAGGTGAAGTCGGCCGTAGAATTCTTCGATATTATGAAGGATAAAATCACCCCAAATGCTGACACGTATGCGTTGCTGCTGGAGGGATTGGAGAATGAAGGTAATGTGAGCAAGGCTAAAACTACCTTTGGGGAAATGATCATCCGCGTCGGATGGCTGGCGGGCAACACAGCGGCTTATAATGCCTTCTTGACCAATCTCGTCAATTGTTCTCAAGTCGAAGAGGCATTGAAGTTTCTGCACGTAATGAAGACTAAGAAGTGTTTTCCCGATCTGAGCTTCTTCTGTAATACGCTTCAAATCCTTTACCAGCGCAAGGACACGAAGTATGCTTTTCCCTTGTGGGAGATGATGAAGCAAAGTGGTATGGCCCCTGATTTGCCCACTTATAATGCAATGGTTGGCGTGTGTTGCTGTGCAACGCCGAGCCAGGTAGAATTTGCTTACCGTCTCTTGGATGAGATGGTTTTTAATGGCGCCTTTCCTGATTCTAATACTTACAATGCTATTTTTGAAGCTCTTATCACTGTCCGCGACGTGGAGGCGGCCTCGAGCATTTTCCGAGAAATGACTAGGAATCAATGTTATCCTGTCTATGCTAATTATGTTATGGCAATGAAAATGTTTTTTGAAGCAGATGATCCAGATATGGCTGTAATGATGTGGAGACAGATGATACAGAAGTCCATTTTCCCAAAATCAGACTGCGCTGCAGTGTTAATTGAAGGGCTTTGTGACCTACGAAGAGTATCAGAAGCACTAAAATATTCTCTGGAGGCATTTAACAGAGGATTGCAAATACCAGTTGAAACTATGACAAAGTTGAAGAATGCTTCTATACAAGCAGGCAGGCGAGGTGCATACGAACAACTTGAAAAAAAATAAAAGGTATTTTAAGTTAGGCCAAGTAATCACCAATGTTTAAGTGTTCTAAGTCAGTCCCCTTGAGGGGGAGAGCTGCAGGCAGTGTTTACTGTGGCAGCTTGGTTCCCATTTCTTGCGGTGGTTATTAGGGAATTTCAAAATCCCAGAGGATTTTGACTGAGGCAGTAAACATGAAGTTCAGCAATGGGATAAGCTTCTCTCATCTTTGCTCGAAGACTGGTTTCTTTTGGTAGCTATTCATACTCTGCAATGAGTAACTCTGTGTCTTAGGGCATCATTTATCTTCATTGAAAAACATCCTGGACATTTTTGTTATATATTTTCTCTTTTT

Fln Alignment:

sp_v1.1_unigene21042___GLDPLLYPPTMPIEMVVSNILKQPPLMGVENALNQLGFGVSVQFVEDVLKMSYGAGMDALKFFRWAGLKLGRKHSPLAWNLLVDLLGKEKLFDAMWDCVKIMRTEGIVSMQTFSSIFGNYAQAGKIEETRMTFDVLEQYGCRKDVVALNCFLSALCRYNQVKSAVEFFDIMKDKITPNADTYAXXXXXXXXXXXVSKAKTTFGEMIIRVGWLAGNTAAYNAFLTNLVNCSQVEEALKFLHVMKTKKCFPDLSFFCNTLQILYQRKDTKYAFPLWEMMKQSGMAPDLPTYNAMVGVCCCATPSQVEFAYRLLDEMVFNGAFPDSNTYNAIFEALITVRDVEAASSIFREMTRNQCYPVYANYVMAMKMFFEADDPDMAVMMWRQMIQKSIFPKSDCAAVLIEGLCDLRRVSEALKYSLEAFNRGLQIPVETMTKLKNASIQAGRRGAYEQLEKK*K
B8LLL9_______________GLDPSQYPPTMPIEMIVSNILKKPPRMGVENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHSPLAWNLLVDLLGKEKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDVIEQYGCPQDVVALNCFLSAFCRYKQSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGNVSKARTTFGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFFRNTLQILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLKNASRQAGKQDAYGQLEKKMK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
252	33			66	0.997452
254	66			33	0.997452
255	66		33		0.997452
257	66		33		0.997452
258		66	33		0.997452
261		33		66	1.0
321	11		88		0.923564
324			11	88	0.923564
326		88	11		0.923564
345	11		88		0.923564
373	88		11		0.923564
382		22	77		0.999999
389	77		22		0.999999
709		50	50		1.0
710			50	50	1.0
711		50	50		1.0
712	50		50		1.0
772		42		57	1.0
1706		93	6		0.999453
1945	14		42		1.0
1947	25		75		1.0
2020	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain