SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21029

Length: 2487 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21029
TACATGGGGACATGGTAAATCATTGGGTTTCGGAATTTTGTTCACATGTATATGGTGATGGATCAGTGTTTGTTGGGAGCTACATCGTAACAAATTTGTGGAAATACTTTGGCTTGCAATTCAAGGTACCTCGCCTTCGCCTGCCTATAATATAACTGGCAAAGGCTATTTTGTGTGCAGAGCATTCATTATTTCCTTCCTATATTGATCGATCGAGAGAGAGGGTATTGATGGAGAAGGGCGTAGGCGAATGGATTCGTGGACTTCGTGCGTCTGCCAATGGCGCCCTGAGTCAGTACGAGCCCGTCACACTGGTCATCTTCCCCTTTGTAGCCTCTCTTTTGAGCCTTGTGGTGGGCAGGCTCATTCATCTCTCCCTGCAAATGGTGCAGGAAAATGGACTCAAGGCAACCATTGCAATTATTGTTATGAATACCATCAGGCTGATTCCTGGAGTCAGAGGTCACATCGAACGGGAGAAGGGAAAGGTTGTTGAGAAGATGCAGTCTAGTGTTAAATCTGGACGAGAAAATTGGCAAACTGAGCTGCCAAGGGCTGGTCTTGGTATAGGAGTCATAGAAAGGTTGAAATTTGAGAAGTCAAAAGATGTGCAATGGCAAGGAAGATGCTCTGGTACAGTGTATATTGGTGGGAGTGAATCCGAAGGACATTTTTCACTGATAAATGAAGCATATTCCATGTTTTCTCACACCAACCCGCTGCATTTGAGCGTTTTCCCAAGTATAGCACGATTTGAGAGTGAGGTGGTAGCAATGACAGCAAGCATGTTTGGTAGTAGAGAAAAGGCATCTGGAGGACAAGTTTGTGGTAATATGTCTTCGGGAGGCACAGAAAGTATTATACTTGCAGTAAAGTCTTCACGGGACTATATGAAAGTCAAGAAGGGAATTATGAAACCAGAAATGATAATTCCAGAATCTGCCCATTCTGCATATGATAAAGCGGCCCAATACCTTAAAATCAAGCTATGGCGTGTACCGGTAAACGAAGATTTCCAAGCAGATGTAAAAGCAATCCAGCGTTATTTGAACAAGAATACGGTTATGATTGTTGGCTCAGCACCGGGTTTTCCTCATGGTATCATTGATCCCATCGAAGAACTTGGAGACTTGGCCTTGCGCTGGGGTATTTGCTTTCACGTTGATCTCTGCCTTGGAGGTTTTGTGCTTCCTTTTGCTCGCAAATTAGGGTATCCAATTCCACCTTTTGATTTCACTGTTCAAGGAGTAACTTCAATATCAGTGGATACTCACAAGTATGGCCTAGGGCCAAAGGGCACAAGTGTTGTGCTGTATCGCAATCATGAAATCAGAAAGCAACAATTTGTGGCTGTAACGGAGTGGTCAGGAGGTCTTTATGTTTCACCAACTGTTGCTGGAAGCAGGCCTGGTGGTCTTATTGCTGGTGCCTGGGCAGCTATGATGAGTGTTGGGGAGGAAGGATATCTGGAGGCAGTGAGAAAAGTAATGGAAGTATCAAAAACTTTTCTGCAAGGAATAAAGCAAATTCCAGAACTATTCATTGTGGGAAGACCAGACATGACAGTCATTGCATTTGGATCAGATAAGCTCGATATTTTTAAAGTGAATGATGTTCTGTCAACACGAGGATGGCATCTAAATGCTTTACAAAGACCTAACAGCATACACATATGTCTGACTCTTCAGCATACCCTTATAGCAGAAGATTTCTTGAAAGATCTGAAAGAAGCAGTTACAACTGTGCAAGAAAATCCAAGTGCATTTGAAGATGGCATGGCTCCAATATATGGAGCTGCTGGAAAGATGCCAGACAGAGGGATGGTGCAGGAGTTTCTGATTGAATATATGGACAATGCTTGCTAGTCACTTTCAAAAATATTTTTTACACTGATACTAGGTGATACTATCAGTCAATGCCATTATATCATTCTTTATGATTTGCAGACCAAGATGTAGAATGCCAGATTTCCTGTTTCCATATTATCAAATTTATGTATCTCAATTATGACTCATGGGATGGCAAATCAGGTTTCCCTTTATCTTGGAAATGTGATTTGTCGTATTTCCTGTATCTCAAACTATGTCACATGGGATTGCAAGTCAATATTTCATTTATCTTGGAAATATGATTTGTATTCTTTTGTGTATCCCAAAATTTCACTCGGGATGGCAAATCTAGCTCCCCTTTATCTTGGAAGCATGATTTGTGCTCTTCTGTTTTAACTTTTATGTCAAAAGGTGCATTAATGTCAAGTTCTTGTTTTTCCAGTTCTAGTTATAGTAAACTGAATTTCAATATCACAGCTGGGAGTGTCCTCATTTATCATTTATGCACAGAAACAAATTCAGGGTATCATTTTTCTCTAATCATCAATTTGATGAAAGATACTGTTTTTATTTGATGTTGTATCATTGCACTATATATGTTACTTGATGTGCTTTATGCCATCGGTAGTTAAAGTTTATTAAATATTCCCGTTTCCCT

Ace file of the UniGene sp_v1.1_unigene21029

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	sphingosine phosphate lyase, putative (EC:4.1.2.27); K01634 sphinganine-1-phosphate aldolase [EC:4.1.2.27]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	sphingosine-1-phosphate lyase	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Sphinganine-1-phosphate aldolase.	EC:4.1.2.27	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Sphingolipid metabolism	00600		0.0	71%
AutoFact	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	sphingolipid catabolic process	GO:0030149	Biological Process	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	80%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	80%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF1

Fln msg:

Fln protein: MEKGVGEWIRGLRASANGALSQYEPVTLVIFPFVASLLSLVVGRLIHLSLQMVQENGLKATIAIIVMNTIRLIPGVRGHIEREKGKVVEKMQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFSHTNPLHLSVFPSIARFESEVVAMTASMFGSREKASGGQVCGNMSSGGTESIILAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELGDLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDTHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMSVGEEGYLEAVRKVMEVSKTFLQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTRGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKEAVTTVQENPSAFEDGMAPIYGAAGKMPDRGMVQEFLIEYMDNAC*

Protein Length: 546

Fln nts: TACATGGGGACATGGTAAATCATTGGGTTTCGGAATTTTGTTCACATGTATATGGTGATGGATCAGTGTTTGTTGGGAGCTACATCGTAACAAATTTGTGGAAATACTTTGGCTTGCAATTCAAGGTACCTCGCCTTCGCCTGCCTATAATATAACTGGCAAAGGCTATTTTGTGTGCAGAGCATTCATTATTTCCTTCCTATATTGATCGATCGAGAGAGAGGGTATTG_-_ATGGAGAAGGGCGTAGGCGAATGGATTCGTGGACTTCGTGCGTCTGCCAATGGCGCCCTGAGTCAGTACGAGCCCGTCACACTGGTCATCTTCCCCTTTGTAGCCTCTCTTTTGAGCCTTGTGGTGGGCAGGCTCATTCATCTCTCCCTGCAAATGGTGCAGGAAAATGGACTCAAGGCAACCATTGCAATTATTGTTATGAATACCATCAGGCTGATTCCTGGAGTCAGAGGTCACATCGAACGGGAGAAGGGAAAGGTTGTTGAGAAGATGCAGTCTAGTGTTAAATCTGGACGAGAAAATTGGCAAACTGAGCTGCCAAGGGCTGGTCTTGGTATAGGAGTCATAGAAAGGTTGAAATTTGAGAAGTCAAAAGATGTGCAATGGCAAGGAAGATGCTCTGGTACAGTGTATATTGGTGGGAGTGAATCCGAAGGACATTTTTCACTGATAAATGAAGCATATTCCATGTTTTCTCACACCAACCCGCTGCATTTGAGCGTTTTCCCAAGTATAGCACGATTTGAGAGTGAGGTGGTAGCAATGACAGCAAGCATGTTTGGTAGTAGAGAAAAGGCATCTGGAGGACAAGTTTGTGGTAATATGTCTTCGGGAGGCACAGAAAGTATTATACTTGCAGTAAAGTCTTCACGGGACTATATGAAAGTCAAGAAGGGAATTATGAAACCAGAAATGATAATTCCAGAATCTGCCCATTCTGCATATGATAAAGCGGCCCAATACCTTAAAATCAAGCTATGGCGTGTACCGGTAAACGAAGATTTCCAAGCAGATGTAAAAGCAATCCAGCGTTATTTGAACAAGAATACGGTTATGATTGTTGGCTCAGCACCGGGTTTTCCTCATGGTATCATTGATCCCATCGAAGAACTTGGAGACTTGGCCTTGCGCTGGGGTATTTGCTTTCACGTTGATCTCTGCCTTGGAGGTTTTGTGCTTCCTTTTGCTCGCAAATTAGGGTATCCAATTCCACCTTTTGATTTCACTGTTCAAGGAGTAACTTCAATATCAGTGGATACTCACAAGTATGGCCTAGGGCCAAAGGGCACAAGTGTTGTGCTGTATCGCAATCATGAAATCAGAAAGCAACAATTTGTGGCTGTAACGGAGTGGTCAGGAGGTCTTTATGTTTCACCAACTGTTGCTGGAAGCAGGCCTGGTGGTCTTATTGCTGGTGCCTGGGCAGCTATGATGAGTGTTGGGGAGGAAGGATATCTGGAGGCAGTGAGAAAAGTAATGGAAGTATCAAAAACTTTTCTGCAAGGAATAAAGCAAATTCCAGAACTATTCATTGTGGGAAGACCAGACATGACAGTCATTGCATTTGGATCAGATAAGCTCGATATTTTTAAAGTGAATGATGTTCTGTCAACACGAGGATGGCATCTAAATGCTTTACAAAGACCTAACAGCATACACATATGTCTGACTCTTCAGCATACCCTTATAGCAGAAGATTTCTTGAAAGATCTGAAAGAAGCAGTTACAACTGTGCAAGAAAATCCAAGTGCATTTGAAGATGGCATGGCTCCAATATATGGAGCTGCTGGAAAGATGCCAGACAGAGGGATGGTGCAGGAGTTTCTGATTGAATATATGGACAATGCTTGCTAG___TCACTTTCAAAAATATTTTTTACACTGATACTAGGTGATACTATCAGTCAATGCCATTATATCATTCTTTATGATTTGCAGACCAAGATGTAGAATGCCAGATTTCCTGTTTCCATATTATCAAATTTATGTATCTCAATTATGACTCATGGGATGGCAAATCAGGTTTCCCTTTATCTTGGAAATGTGATTTGTCGTATTTCCTGTATCTCAAACTATGTCACATGGGATTGCAAGTCAATATTTCATTTATCTTGGAAATATGATTTGTATTCTTTTGTGTATCCCAAAATTTCACTCGGGATGGCAAATCTAGCTCCCCTTTATCTTGGAAGCATGATTTGTGCTCTTCTGTTTTAACTTTTATGTCAAAAGGTGCATTAATGTCAAGTTCTTGTTTTTCCAGTTCTAGTTATAGTAAACTGAATTTCAATATCACAGCTGGGAGTGTCCTCATTTATCATTTATGCACAGAAACAAATTCAGGGTATCATTTTTCTCTAATCATCAATTTGATGAAAGATACTGTTTTTATTTGATGTTGTATCATTGCACTATATATGTTACTTGATGTGCTTTATGCCATCGGTAGTTAAAGTTTATTAAATATTCCCGTTTCCCT

Fln Alignment:

sp_v1.1_unigene21029___MEKGVGEWIRGLRASANGALSQYEPVTLVIFPFVASLLSLVVGRLIHLSLQMVQENGLKATIAIIVMNTIRLIPGVRGHIEREKGKVVEKMQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFSHTNPLHLSVFPSIARFESEVVAMTASMFGSREKASGGQVCGNMSSGGTESIILAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELGDLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDTHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMSVGEEGYLEAVRKVMEVSKTFLQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTRGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKEAVTTVQENPSAFEDGMAPIYGAAGKMPDRGMVQEFLIEYMDNAC
A9NUF1_______________MEKAVGEWICGLRASANGALRQYEPVILVIFPFVASLLSLVVGRLIHLFLQLAQDNGFKGAFLIILMNNIRLIPGLRGYIEREKGKVVGKLQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFAHTNPLHLSIFPSIARFEGEVVAMTASMFGSREKASGGQVCGNMSSGGTESILLAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELADLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDIHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMTVGEEGYLEAVRKVMEVSKTIQQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTQGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKKAVTTVQENPSAFEDGMAPIYGAAAKMPDRGMVQDLLIEYMDNTC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
253			50	50	1.0
1062	33		66		0.997452
1080	60		40		1.0
1081			60	40	1.0
1082		60	40		1.0
1086			60	40	1.0
1089		40		60	1.0
1091			40	60	1.0
1144		40		60	1.0
1497	66			33	1.0
1594		14		85	0.993533
2203	83		16		0.994512
2227	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain