SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21020

Length: 1704 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21020

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	strictosidine synthase family protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	81%
Blast2go	Strictosidine synthase, conserved region	IPR018119	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRD1

Fln msg:

Fln protein: MTGGVGITTYAVALAMIGLAIYVSTDPFHYSPIADFPDFKTHKVDFPPWSQFPVAKDHQNKLQRSEIKFLNQVQGPESLAFDPQGRGPYTGVADGRIMFWDGQQWSEFAYTSPNRSEELCKPGPTPLSNIKNEHICGRPLGLRFDKRTGDLYIADAYFGLLVVGPEGGLATRLVSEVDGVPLRFTNDLDIDKEQGIVYFTDSSSVYQRRNFVQLVFSADTSGRILKYNPQTKEASLILRNIQFPNGLSLSKDGSFFLFSDSCVGRLKRYWLKGPKAGTTDIFALLPGHPDNVRTNEKGEFWVALHCRRTLYAHLMGLYPGLRKAILKLPIPTKYHYLAQIGGRLHAVLVKYSPDGELVEILEDSDGKVIRAVSEVEERDGKLWMGSVLMPFMAVY*

Protein Length: 397

Fln nts: ATGGGGATGTCTCCTTGCATTGAGTCTGAGAGAGATATTTATTATAACATTAGGCAAACAATTCCCCACCTTCCCTTCTTCAATTAAACACCTACCATTCTTCGATGCCCGCCGAAAGTTCTCTAGTATTAAGCTTTAAGCTTCAACAGCCCAGGCCGCCAGGAGGAGGAAATC_-_ATGACGGGAGGAGTCGGAATCACAACATATGCAGTGGCACTGGCCATGATAGGCCTGGCAATCTATGTCAGCACAGACCCATTTCATTACAGCCCCATTGCAGACTTCCCCGACTTCAAAACACACAAGGTCGACTTCCCGCCATGGTCGCAGTTTCCTGTGGCCAAGGACCATCAGAACAAACTCCAGAGGTCTGAAATTAAGTTCTTAAACCAAGTCCAGGGACCCGAGAGTCTCGCGTTCGATCCTCAGGGAAGAGGGCCTTACACTGGTGTCGCAGATGGCCGAATCATGTTCTGGGACGGCCAGCAGTGGTCGGAATTCGCTTACACGTCTCCCAACAGGTCGGAGGAGCTGTGCAAACCAGGGCCGACCCCCCTGTCGAATATAAAAAATGAGCATATATGCGGTCGGCCTCTGGGTCTTCGGTTCGATAAGCGCACGGGTGATCTGTATATTGCAGATGCTTATTTTGGGCTGCTTGTGGTTGGTCCTGAAGGTGGGCTCGCTACTCGCCTTGTTAGTGAAGTGGATGGGGTTCCTTTGAGGTTCACCAACGACCTTGACATTGACAAGGAGCAGGGGATTGTGTACTTTACGGACAGCAGTTCTGTTTATCAGAGAAGGAACTTCGTCCAGTTGGTTTTTTCAGCAGATACTTCAGGCAGAATATTAAAGTACAACCCACAAACCAAGGAAGCTAGCTTGATTCTTAGAAATATTCAGTTTCCGAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTCTCTTCAGTGACAGTTGTGTTGGAAGGCTGAAGAGGTATTGGTTGAAAGGCCCCAAAGCGGGCACAACAGACATCTTTGCACTTTTGCCAGGGCATCCGGACAACGTGAGGACTAATGAGAAAGGAGAATTTTGGGTTGCTTTGCACTGTCGCCGTACTCTGTATGCCCATTTGATGGGTTTGTATCCTGGACTCAGAAAAGCCATACTGAAGTTACCCATTCCCACAAAATACCATTATTTAGCGCAAATTGGAGGAAGACTTCATGCAGTACTTGTGAAGTACAGTCCGGATGGAGAACTTGTTGAGATCTTAGAGGATAGCGACGGAAAGGTTATCAGGGCAGTGAGTGAAGTTGAAGAGAGGGATGGAAAGCTATGGATGGGATCTGTCTTGATGCCTTTTATGGCAGTGTATTGA___TGACTTTTATTGTGATCATTGGACATGAGATGCATAGTGTATCAGTCTTGAAAAGGAACCAGAGCTCCAGCGGGTGGTGAAACATGTCCAAACAGGTGATTAAAACGATGGTGGATGGAAAACTTAGTGTGGGGCAAATTCACAAGAAGAGCATGTCCTAGAGTCTTTCATCATTTGTTTATATTTTGTTGAGACTTGGGATTTAACAGTTTGCCCCTCGAATAAATATCACAGTAGATCTATTTTTTTGAGATCTATTTGGGATAAGATAAAGCAGTGGAACACTTTTTTGATGCTGAACAAATAGAGAATTCAAAGTTATCTATCTTAATTTATATTTTT

Fln Alignment:

sp_v1.1_unigene21020___MTGGVGITTYAVALAMIGLAIYVSTDPFHYSPIADFPDFKTHKVDFPPWSQFPVAKDHQNKLQRSEIKFLNQVQGPESLAFDPQGRGPYTGVADGRIMFWDGQQWSEFAYTSPNRSEELCKPGPTPLSNIKNEHICGRPLGLRFDKRTGDLYIADAYFGLLVVGPEGGLATRLVSEVDGVPLRFTNDLDIDKEQGIVYFTDSSSVYQRRNFVQLVFSADTSGRILKYNPQTKEASLILRNIQFPNGLSLSKDGSFFLFSDSCVGRLKRYWLKGPKAGTTDIFALLPGHPDNVRTNEKGEFWVALHCRRTLYAHLMGLYPGLRKAILKLPIPTKYHYLAQIGGRLHAVLVKYSPDGELVEILEDSDGKVIRAVSEVEERDGKLWMGSVLMPFMAVY
B8LRD1_______________MSETVGVRT-VLGVALLGLAIYVSTDPFHLSPIARFPNFKSYAVDSPPWSQLPLPKDDQNRLQKSEIKFLNQVQGPESIAFDPQGRGPYTGVADGRIMFWNGGQWSEFSFTSPNRSEELCKPGTNPMANIKYEHICGRPLGLRFNKGTGDLYIADAYFGLLVVGPQGGQATRLVSEVEGIPLKFTNDLDID-EQGIVYFTDSSVVYQRRNFIQLAFSAEPSGRVLKYNPQTKEASLLVGNIQLPNGLSLSKDGSFFVFSDTCVGRLKRHWLKGPKTGTTDVFAILPGHPDNVRTNEKGEFWVALHCRHNLYSHLLGMYPGVRKAILKLPIPAKYQYSAFVGGRLHGSVVKYSPDGELIEILEDREGKVVRAVSEVEEKDGKLWMGSVLMPFVAVY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
155	33		66		0.997452
156		66		33	0.997452
157		66	33		0.997452
159		66	33		0.997452
160		66	33		0.997452
492		10	90		0.90298
1228	89			10	0.999919
1233			89	10	0.999919
1234		10	89		0.999919
1324	93		6		0.999999
1327			93	6	0.999999
1330		6		93	0.999999
1334			6	93	0.999999
1336			6	90	0.999997
1338		6	93		0.999999
1341		7	92		0.999999
1342	7	92			0.999999
1397			7	92	0.999999
1435	5		94		0.998894

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain