SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21014

Length: 1053 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21014

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase atmrk1, putative (EC:2.7.10.2)	-	-	4.0e-22	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein kinase	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	transferase activity	GO:0016740	Molecular Function	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
94		75	25		0.996473
96	25			50	1.0
97		25	75		0.996473
99	75			25	0.996473
100	75		25		0.996473
102		25	50	25	0.995533
103		25	75		0.996473
104	75			25	0.996473
106			25	75	0.996473
107		75	25		0.996473
108	75	25			0.996473
111		75	25		0.996473
112		75		25	0.996473
113		25		75	0.996473
115		25		75	0.996473
117		25	75		0.996473
118	25	75			0.996473
161	11		88		0.923564
1004	88		11		0.923564
1005		77	11	11	0.968132
1006	88		11		0.923564
1008	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain