SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20972

Length: 3034 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20972
CATATCCTTGTGTTGTTGGATTGTCCCACATATATACTCTTTTCTTTGGTTTTTCCTCGGCGGAGAAATCGTGCGCATTCTTCTCAAATACATAGAGGCACAGGAGGTTCCTGTCACAATCTGGAATGGGATGCGTTACATTTGTTTAGGAGATCGGCCATTTACATGTGTGTAGGATTGTGCTTGAATCTGGCAAGCAAGCAATCCGCAGTTGGGATTTTGCTTGTTGGGTGGTTGAGGATCGTTGAGAGTAGTTGAAGAGGAAATTAAATGGTGGCATCATCCCGTCAGATGGAGTTTTCAGAATTCAATTGTGGGCATAATCTGTGCAGTCCTTATTGTTGCAGGCTGTTGAAGCGCTGATGAGGATGCTGAGTCCTGAGGATTCATTTTTAAAGGGCTAAAATTTCACAAATATTTTAAGGGCACTTGGGTGCATCTAGGTATATCAGTTTTGTGGTAATAGATAGAAAAATCTTTTACCCAATTCAAGAAATCAATTTGGCAGATTAGTTTTCTAGGCTAGAAACTAATTGTAAACTGAACTTGAAGGCTAAGATTGGGACAGAAACCCAGGGATTCTGCAGGATGAAGTGCTTTCATTTTTCGTATGCGGAAAGGGAGAGGAAGGAAGATGCGAGGATCAACAAGAAATCAATATGGACGAGGTCATTGAGTGGTGGGTCGTGCCCAGAGGGGAGGAGGTCTGGTTCTGACATTAACTCTCAGACAATTTCTTCAGATGTAAGCGTTGATTCCCCTGGACCCAACATAACGACCAGCTTGTCACAGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACAGAAAAGGATTGCAAGGGCATAAAGAATGGGTTACAGAAGTGCATTTTCTTGGGCTTGTTGAGCATCCAAATCTAGTGAACTTGGTTGGTTATTGTGCTGAAGATGATGAAAGAGGTATACAACGGCTCTTGGTCTATGAGTTTATGCCAAACAAGAGCCTAGAGGACCACCTATTGAGTCGAGTTCTCCCAGCTCTCCCATGGACTTTGAGATTACAAATAGCCCTAGGGGCAGCTCGTGGCTTAGCTTACCTGCATGAAGAAATGGATTTCCAGATAATTTTTCGAGATCTTAAAACATCTAATATTCTGTTAGATGAAAACTTCAATCCAAAATTATCAGATTTTGGATTGGCTAGGCAAGGACCAGCAGGAGGTATCAGTCATGTCTCGACAGCGGTTGTAGGCACTGTGGGATATGCAGCTCCAGAATATATTCAAACTGGCCATCTCACATCCAAGAGCGACGTTTGGAGTTTTGGAGTAGTGTTGTATGAACTACTTACAGGAAGGAGATCCATGGATAGAAACCGGCCAAAAAATGAACAAAAGCTTCTGGAATGGGTGAAGCCATATATATCAGATGCAAGAAAATTCCGTCTAATAATGGACCCCAGACTTGATGGTCAATACTCTCTCAAATTAGCACACAAAGTTGCGTCTCTGGCCAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAAATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATATTTATTTCTCCTGAATTATTGATGTAAGCACATAGGATGGATTGTGTATTGTTTTTAATTTAGATTAAATCGTAAGAGTAACAACCATCTGTTTTGATTTATCAGAGATAATTGAAATTAGAAATTCTCAGTTCATCATAATTAGAAGCAGTCTACAATCCTCGAGCAGACTGCTTTTGTGGATTACAATTCTCATATGGATGAGCTTGTGTGGTATTCAAACCAACGTACGTGATTACTGCAGAGAATGGTTGTGATTCCTTCAAGATTCCTACCGCACATTTGAACGGTTATTACCATAAGACTAATCAATTAAGGCAATAAATTTGGCATGTGAGTTTTCAGTTAAAAGCTTTACACAGGTGTTTCAGTTCAGACTCTTTCCAAATGTCCTGTTCATTACGGTTATTGCGTTCAACAGTATTTCTTCGGGAAACGAAAAAAGCGTGTCACTCTTAATAAATGTGATACCTCTTAACATAAAGTTAGGAGCAATAACAGTAATAAAGGAAGACAGCAATGACGGAAGCTCTCTGAAAGAATTTGAATATATTGTCCGCACAACCGTGGAAATCCTACTGTTATTTTGTACTGCAAGGGTAGCATTATGTTTATCTAGAAATGACCCTGCTGTTGTGCTGATAATTTTTACATCATTCTCATTGTTAAGGTTTTTGAAGCTTTGGTAAGAAGTCTTTGTGGGGGTGATTAATGAAAGGCATTGCTAGTGTATCTGTGCATGTGTGAATGACTAGTGAATCAACGTCCTTATGATTAAACTGGGAATCTACTTCTTTACCGCCCATTGCACTGCAGAGTGTACCTATTCATCACACAATTTTGTAGTAAAGATTTGCGCTGAAGAAATGTTTTCAAAGCAATGTAGCACACTTGCAGCAAAATACACTTGTTTCATGCCATTAAATATATCTGCAGACTTGGATTTATTGTCTTGTTTGAAAGTAATTCCAATAGTTATGGT

Ace file of the UniGene sp_v1.1_unigene20972

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)	-	-	57%
FL-Next	sp=Probable receptor-like protein kinase At5g47070; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein kinase chloroplast	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	76%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	76%
Blast2go	Protein kinase-like domain	IPR011009	-	76%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	76%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	76%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LTC0

Fln msg: your sequence is longer than subject: 443 - 410

Fln protein: MKCFHFSYAERERKEDARINKKSIWTRSLSGGSCPEGRRSGSDINSQTISSDVSVDSPGPNITTSLSQRPPNSLRVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSLDDPHAKVEVAVKQLNRKGLQGHKEWVTEVHFLGLVEHPNLVNLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLSRVLPALPWTLRLQIALGAARGLAYLHEEMDFQIIFRDLKTSNILLDENFNPKLSDFGLARQGPAGGISHVSTAVVGTVGYAAPEYIQTGHLTSKSDVWSFGVVLYELLTGRRSMDRNRPKNEQKLLEWVKPYISDARKFRLIMDPRLDGQYSLKLAHKVASLANSCLVKHPRSRPKMSEVVEILKQIVEAAEAESPQPPIVCETVDSSTEILTEPAKDTVNSKRRMLLLRDMMNLRSRDNGRPAWRAWTPKMVRTW*

Protein Length: 444

Fln nts: CATATCCTTGTGTTGTTGGATTGTCCCACATATATACTCTTTTCTTTGGTTTTTCCTCGGCGGAGAAATCGTGCGCATTCTTCTCAAATACATAGAGGCACAGGAGGTTCCTGTCACAATCTGGAATGGGATGCGTTACATTTGTTTAGGAGATCGGCCATTTACATGTGTGTAGGATTGTGCTTGAATCTGGCAAGCAAGCAATCCGCAGTTGGGATTTTGCTTGTTGGGTGGTTGAGGATCGTTGAGAGTAGTTGAAGAGGAAATTAAATGGTGGCATCATCCCGTCAGATGGAGTTTTCAGAATTCAATTGTGGGCATAATCTGTGCAGTCCTTATTGTTGCAGGCTGTTGAAGCGCTGATGAGGATGCTGAGTCCTGAGGATTCATTTTTAAAGGGCTAAAATTTCACAAATATTTTAAGGGCACTTGGGTGCATCTAGGTATATCAGTTTTGTGGTAATAGATAGAAAAATCTTTTACCCAATTCAAGAAATCAATTTGGCAGATTAGTTTTCTAGGCTAGAAACTAATTGTAAACTGAACTTGAAGGCTAAGATTGGGACAGAAACCCAGGGATTCTGCAGG_-_ATGAAGTGCTTTCATTTTTCGTATGCGGAAAGGGAGAGGAAGGAAGATGCGAGGATCAACAAGAAATCAATATGGACGAGGTCATTGAGTGGTGGGTCGTGCCCAGAGGGGAGGAGGTCTGGTTCTGACATTAACTCTCAGACAATTTCTTCAGATGTAAGCGTTGATTCCCCTGGACCCAACATAACGACCAGCTTGTCACAGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACAGAAAAGGATTGCAAGGGCATAAAGAATGGGTTACAGAAGTGCATTTTCTTGGGCTTGTTGAGCATCCAAATCTAGTGAACTTGGTTGGTTATTGTGCTGAAGATGATGAAAGAGGTATACAACGGCTCTTGGTCTATGAGTTTATGCCAAACAAGAGCCTAGAGGACCACCTATTGAGTCGAGTTCTCCCAGCTCTCCCATGGACTTTGAGATTACAAATAGCCCTAGGGGCAGCTCGTGGCTTAGCTTACCTGCATGAAGAAATGGATTTCCAGATAATTTTTCGAGATCTTAAAACATCTAATATTCTGTTAGATGAAAACTTCAATCCAAAATTATCAGATTTTGGATTGGCTAGGCAAGGACCAGCAGGAGGTATCAGTCATGTCTCGACAGCGGTTGTAGGCACTGTGGGATATGCAGCTCCAGAATATATTCAAACTGGCCATCTCACATCCAAGAGCGACGTTTGGAGTTTTGGAGTAGTGTTGTATGAACTACTTACAGGAAGGAGATCCATGGATAGAAACCGGCCAAAAAATGAACAAAAGCTTCTGGAATGGGTGAAGCCATATATATCAGATGCAAGAAAATTCCGTCTAATAATGGACCCCAGACTTGATGGTCAATACTCTCTCAAATTAGCACACAAAGTTGCGTCTCTGGCCAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAA___ATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATATTTATTTCTCCTGAATTATTGATGTAAGCACATAGGATGGATTGTGTATTGTTTTTAATTTAGATTAAATCGTAAGAGTAACAACCATCTGTTTTGATTTATCAGAGATAATTGAAATTAGAAATTCTCAGTTCATCATAATTAGAAGCAGTCTACAATCCTCGAGCAGACTGCTTTTGTGGATTACAATTCTCATATGGATGAGCTTGTGTGGTATTCAAACCAACGTACGTGATTACTGCAGAGAATGGTTGTGATTCCTTCAAGATTCCTACCGCACATTTGAACGGTTATTACCATAAGACTAATCAATTAAGGCAATAAATTTGGCATGTGAGTTTTCAGTTAAAAGCTTTACACAGGTGTTTCAGTTCAGACTCTTTCCAAATGTCCTGTTCATTACGGTTATTGCGTTCAACAGTATTTCTTCGGGAAACGAAAAAAGCGTGTCACTCTTAATAAATGTGATACCTCTTAACATAAAGTTAGGAGCAATAACAGTAATAAAGGAAGACAGCAATGACGGAAGCTCTCTGAAAGAATTTGAATATATTGTCCGCACAACCGTGGAAATCCTACTGTTATTTTGTACTGCAAGGGTAGCATTATGTTTATCTAGAAATGACCCTGCTGTTGTGCTGATAATTTTTACATCATTCTCATTGTTAAGGTTTTTGAAGCTTTGGTAAGAAGTCTTTGTGGGGGTGATTAATGAAAGGCATTGCTAGTGTATCTGTGCATGTGTGAATGACTAGTGAATCAACGTCCTTATGATTAAACTGGGAATCTACTTCTTTACCGCCCATTGCACTGCAGAGTGTACCTATTCATCACACAATTTTGTAGTAAAGATTTGCGCTGAAGAAATGTTTTCAAAGCAATGTAGCACACTTGCAGCAAAATACACTTGTTTCATGCCATTAAATATATCTGCAGACTTGGATTTATTGTCTTGTTTGAAAGTAATTCCAATAGTTATGGT

Fln Alignment:

sp_v1.1_unigene20972___MKCFHFSYAERERKEDARINKKSIWTRSLSGGSCPE--GRRSGSDINSQTISSDVSVDSPGPNITTSLSQRPPNSLRVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSL-DDPHAKVEVAVKQLNRKGLQGHKEWVTEVHFLGLVEHPNLVNLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLSRVLPALPWTLRLQIALGAARGLAYLHEEMDFQIIFRDLKTSNILLDENFNPKLSDFGLARQGPAGGISHVSTAVVGTVGYAAPEYIQTGHLTSKSDVWSFGVVLYELLTGRRSMDRNRPKNEQKLLEWVKPYISDARKFRLIMDPRLDGQYSLKLAHKVASLANSCLVKHPRSRPKMSEVVEILKQIVEAAEAESPQPPIVCETVDSSTEI
Q9LTC0_______________MNCLFLFKSKKPRKQQKDNNKNKRKGKELLQNSAPELTNRSETSSFNLQTPRS-----LPSPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPPLVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYLH---DLKVIYRDFKSSNVLLDDQFCPKLSDFGLAREGPDGDNTHVTTARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRRTIERNKPVAERRLLDWVKEYPADSQRFSMIVDPRLRNNYPAAGARSLAKLADLCLKKNDKERPTMEIVVERLKKIIE--ESDSEDYPMATTTTKESSQV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
453		50		50	1.0
973	85	14			0.993533
975	85			14	0.993533
976	85		14		0.993533
979	85	14			0.993533
1015	11			88	0.923564
1017	11			88	0.923564
1030		12		87	0.992554
1124	88		11		0.923564
1504	10		90		0.90298
1505	10	90			0.90298
1980	75		25		0.996473
2623	22		77		0.999999
2674	77	22			0.999999
2676	77			22	0.999999
2677	77	22			0.999999
2678	77		22		0.999999
2684		77		22	0.999999
2690		22		77	0.999999
2696	22			77	0.999999
2697		25	75		1.0
2698	75			25	1.0
2699		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain