SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20970

Length: 1199 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20970

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lactoylglutathione lyase, putative	-	-	2.99878e-43	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZU5

Fln msg: your sequence is longer than subject: 264 - 187

Fln protein: MGKEKDKTSASLPPPPSLTLNHVSFVCKSVAASKKFYENVLGFQVVKRPSSFDFEGAWLFNYGIGIHLLQCKPSDNLPKKAEINPKDNHISFHSPDILLVEKKLQEMHIKYEKRVVEEEGLYVDQLFFHDPDGYMVEICNCENFPVVPVACVPSSVKSTFHRLVFPQSKPETEPEYSSKEIALVPMTVAAAQTETDCPTLSTIDPQNISKSNAQEKSQTINLFLDGQIPEKEIEAASGRKSPCLSDAHDEKRPYFLDILDFYL*

Protein Length: 265

Fln nts: ATTGGGGTGTGTTATTCAATTTGCTAAGGAGAGTCTGCGCAGTTTGTTGAAGTTCGTGCCAATCAAATCAGCTCAGTGTCATCACGGGAGTTGAGAGTATCAA_-_ATGGGCAAGGAAAAGGATAAAACTTCAGCTTCCCTACCTCCTCCACCTTCCTTAACTCTGAATCACGTTTCATTCGTCTGCAAATCTGTCGCAGCTTCCAAGAAATTCTACGAGAATGTTCTTGGATTTCAGGTTGTGAAGAGGCCATCTTCATTTGATTTTGAAGGAGCTTGGTTATTCAATTATGGCATCGGGATACATCTGTTGCAGTGCAAGCCTTCGGATAATCTCCCCAAAAAAGCTGAGATCAATCCAAAAGATAACCATATCTCTTTTCACAGCCCAGACATTCTTTTAGTGGAAAAGAAACTGCAAGAAATGCACATAAAATATGAAAAGCGTGTTGTGGAGGAGGAAGGCTTGTACGTGGACCAACTTTTCTTCCATGATCCTGATGGTTACATGGTCGAGATTTGTAACTGCGAGAATTTTCCTGTTGTTCCAGTTGCTTGTGTGCCCTCATCTGTAAAATCAACCTTCCACCGGCTTGTTTTCCCTCAATCTAAACCTGAAACAGAGCCAGAATATAGCAGCAAAGAAATCGCTTTAGTTCCCATGACTGTTGCTGCAGCACAAACGGAAACGGACTGTCCTACTTTGAGTACAATAGATCCCCAAAATATCTCAAAATCTAATGCTCAGGAAAAAAGTCAAACAATTAACCTTTTTCTTGATGGTCAGATTCCAGAAAAAGAGATCGAAGCTGCCAGTGGACGAAAGAGTCCTTGCCTCTCAGACGCACATGATGAGAAAAGGCCTTACTTTCTGGACATTCTGGATTTTTATCTCTAA___TCCATGGCATGCATGCATAGCCCATCATATTCAGGAAAATGGAAAACAATATCCAATGTAGGCAGTGCACAGATATTTTGTAATAAATTAATAATGTTGATGTCTGGCAGGAATTGTATACTGGAAATAGTTTGTGTTCAGAATAAGGCCGTGAGGCGCCTTGAAAGCTTTGTCAACGGCAGCTTTCAAGTAGACATGAACTGTAACTTCTGAGCCTGCTAAACTGGGTATGCAAAGAATGAACGTAGTCCTCCATCCATAGAAGATGCGGCGTTTGTGTCTTATCCTATAGGACAAATCACAT

Fln Alignment:

sp_v1.1_unigene20970___SFDFEGAW--LFNYGIGIHLLQCKPSDNLPKKAEINPKDNHISFHSPDILLVEKKLQEMHIKYEKRVVEEEGLYVDQLFFHDPDGYMVEICNCENFXXXXXXXXXXXXXXTFHRLVFPQSKPETEPEYSSKEIALVPMTVAAAQTETDCPTLSTIDPQNISKSNAQEKSQTINLFLDGQIPEKEIEAASGRKSPCLSDAHDEKRPYFLDILDFYL
A9NZU5_______________SFPFLLLWSRLFNYGFGIHLLQCKSSDNLPQKTEINPTDNHISFQTPDILLVEKKLQEMDIKYEKRVVEDEGLYVDQLFFHDPDGYMVEICNCENLPVVPVTCVPSSVKSTFLRFAFPQSKPKIEPEDSSSEIALVPVNVATAQ--TDFPTL-----------------------------KKDIE-ATGRESPCLSDAHDDKKPYFLNIMDFYL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
802	85		14		0.993533
858	85		14		0.993533
1000		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain