SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20962

Length: 1575 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20962

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: your sequence is shorter than subject: 382 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL*

Protein Length: 383

Fln nts: ATCAACGCAGAGTAAGCAGTGGTATCAACGCAGACAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCCGTCGTGACCTTGGCTGTCACGCAACAGTGATTTCAATCGAGCGTTGGAGATTTTTTCATAAGCGACCGGGGAAGCGTTTTCTCAACAAGTTTATTTCAGGTGTTTTGTTCGCAATTTTTAGATTTCAAA_-_ATGCAGATATTTGTGAAGACATTGACCGGAAAAACCATAACCCTCGAGGTCGAGAGCTCAGACACCATAGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATTTTCGCTGGAAAACAGCTTGAGGATGGCCGAACACTCGCAGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTGAGAGGAGGGATGCAGATCTTTGTCAAAACTCTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCAGACACTATTGATAACGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGACCAGCAGAGGCTGATCTTTGCGGGAAAACAGCTCGAGGACGGACGCACTCTCGCAGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTGAGAGGGGGAATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACTATCACTCTGGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCAGCAGAGGCTGATTTTTGCCGGAAAACAGCTTGAGGACGGACGCACTCTTGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGGATGCAGATTTTTGTCAAAACCCTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCAGACACTATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAGGGGATTCCTCCGGATCAGCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTAGCCGACTACAACATTCAGAAGGAATCTACGCTGCATCTTGTCCTTCGCCTCCGTGGTGGTATGCAGATATTTGTGAAAACGTTGACAGGCAAGACCATCACACTAGAGGTTGAGAGCTCTGATACGATTGATAACGTGAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGAACCCTCGCCGATTATAACATTCAAAAGGAATCCACCCTCCACCTTGTCTTGCGTCTGCGTGGTGGCCTTTGA___GATTGTGGGGAATGAATTTCACTTGACGTTAAAGCCTTACCGTGTAAAGGCTTCGTGTTTTATCAGTTTTAGATGTTGACTTCGTATTCTCTGTTGTTAGACATTCCTTTACAAAGATTAGGGGCTGTATCGGTTGTCAATGTTATGTGAATTATGCACTTTTACTTTTGTGATTGAAATAAAACCGTATGTTCAAATTATTCTTTGATTTACA

Fln Alignment:

sp_v1.1_unigene20962___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
C0PSZ6_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
172	29		64	5	1.0
197		29		70	1.0
267		23		76	1.0
405	11		82		0.999919
435		87	12		0.992554
471		75		25	0.996473
483	33	66			0.997452
491	66	33			0.997452
499	66			33	0.997452
502	33			66	0.997452
506	66		33		0.997452
558		58		33	1.0
582			33	66	1.0
1233		7		92	0.999602
1401	10		90		0.90298
1404	10		90		0.90298
1424	90			10	0.90298
1431		10		90	0.90298
1442	2	97			0.974293
1445	2	97			0.974293
1455	2		97		0.979771
1458	2		97		0.982166
1469		47	52		1.0
1470	17			82	1.0
1473	48	51			1.0
1486		32	67		1.0
1487			77	22	1.0
1490		31		68	1.0
1496	2		97		0.946803
1498			31	68	1.0
1501			4	95	0.996252
1504	78			21	1.0
1508		4		95	0.996252
1512		6		93	0.999999
1516		53		46	1.0
1518	85			15	1.0
1520			52	47	1.0
1526		38		61	1.0
1536			93	6	0.999453
1550		76	23		1.0
1552		38		61	1.0
1558		84		15	0.999986
1563		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain