SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20960

Length: 3235 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20960
ATGGGGGAAAGGGCTTTTGACTGGTTCAATTTTGAACCTGCATGTGACCATGATTTGACTTCCACAAGTAAGTTGTGTTTTTTAAACCTTTCATGGAAAACCCGATAAACCCTACCGAATACAACCATTTTCCCAAATATATTCACACCGTGCACACCCTGAATCCCTGGAATCCCTGGTTATAGGACCCTTTTACCACAAACCTGCAAATAGTACTCGTTTTCAGTGAACTCTAAGATCCTTGCGATATATTGCGTTATAACTTCTTCCGTCGACGAAGAGCGACTTATCCGCTTTCTTCCTCCGTATTCATAAATGGGAAAGGCCAAGGGAAAGCACCGGCTTGATAAATTTTATCACCTTGCAAAAGAGCAGGGTTACAGATCCAGAGCAGCTTTCAAAATAGTCCAATTAGATGCGAAGTTCAGTTTTTTCTCTTCGGCCAGGTCCCTTCTGGATCTGTGTGCGGCCCCTGGCGGGTGGATGCAAGTGGCGGTGAAGCATATGCCCGTTGGGAGTCTGATAATGGGCGTTGATTTGGTGCCCATTCGTCCTATTAGAGGGGCTTTCTCTCTACAGGAGGACATAACTACTCCCAAGTGCAAGGCTTCCATTCGGAAATTAATGAAGGAAAATGGATGTAATATGTTGGATGTTGTGCTGCATGATGGGTCTCCTAATGTGGGAGGTGCTTGGTCTAAGGAAGCCACTACGCAGGCTTCCCTGGTTGTAGATGCATTGAAGCTGGCTGTTGAATTCTTGGCACCCAAGGGAACTTTTGTCTCCAAGGTATTTCGATCGCAAGATTACAATGCAATACTTTATTGCTTCAAACAGTTGTTTGAAAAAGTAGAAGTGACAAAGCCAGTTGCCAGTCGATCGACATCTGCAGAAATATATGTTGTTGGTTTGAGATATAAAGCACCTGCTAAGATTGATCCACGCCTCCTTGATGTTAAACATCTTTTCCAACAAGTTGTTGATCCACCAAAGGTTGTGGATGTTCTCAGAGGATCTAAACAAAAGCGAAATCGTCAAGGATATGAAGAAGGACTTGCAACAATACGGAAGATAGGTCTTGCTTCAGATTTTGTTTGGTCAGATAAGCCTTTGGAAGTCCTCGGTTCAGTTACTTCAATTTCATTTGAGGATCCAGCATGTTCTTCCTTAAAGGATCATTCTCTCACTACTGATGAGATAAAATTACTGTGCGATGATTTGCGGGTTTTGGGGAAACAAGAATTCAAGCTTTTGTTGAAGTGGCGTTTGCACATCCGGAAGGCCTTATCTCCTCAAGTGAAAAATGATTCTGGGGTGGATGAAGTGAACGAAACAGTTGAGGGTGATGATGATGAGCGAATGTTGAGTCAAATGGAGGAATTGCATTCTATTTATGAACGAAAGAAGAAAAAAACAAAGAAACTCCTTGCAAAAAGACGGGCTAAGGCTAAAGCACGTACCCGAACAGGAATGAAAGTGGATGTCATGGAAGATCGCGACAATGACTAGAATTAGTTTTCTTTATCTTCTATTAAGGCTAAGAAGGATCTATTGGTTGTGGATTCTCCAGCACAATCTGATGATCAGATTGATGTTGCAAGTGAAGATGAGGCTAATGGCCCAAAATCAGAAGACAGTGAAGCAAGTGATGTTGATTCTGATGAAGAGAGGAGGAGGTATGATGAAGAACTTGAAAACTGTCTGGATCGAGCTTATGAGCGGTTTGTTGCTGCAAAAGAAGGCAGTACAAAGAAGCGAAAACGTGCAAAATTAATTAATGATGCTACTGATAGCGAAGTCTGGAAGGACAATGGGACTTATCAGGATAATATTCATGAAGACTATTCAGATGAGAGTGCTGAGGATGGTGAGGCCAATCCATTGGTGGTGCCACTAACTGAGGAAGAACAACCATCTAAAGAGCAGCTGACTGAGCAGTGGTTCAGTCAGGATCTCTTCATGGGTTTTCAAGACACCTGCAATAAAGAAGACAGTGATTCTGACATGTCAGAAGGAGGTCAAGATATCAAATCATTCCCAAAATCATCTGGTGAAAGGAGAAGTGAGCCCAACAATAAATCCAACAAGAAGAATATTTCTATCACATCTGAGTCCAAGATTTTGCAAGACAACGGATCTGAGCCAGAGAGAGATGATGGCTTTGAAATAGTTCCTGCTGCATCTTCTGGCTCAAGTGATGAATCTTCTTCGGAAGATGAATCAGATTATGACACTGATTCCAAAGCAGAAATTTTAGCTTATGCGAAGAAAATGTTGAGGAAAAAGCAACGGGAAGAGATTCTAGATGCTGCCTACAATAGGTATACTTTTGATGATGAAGGTCTGCCGGAATGGTTTGTCAAGGAAGAAAAAATTCACTGCCAGCCTCAGAAACCCATAACAAGAGAGGAGATTGAAGCCATGAAAGCACAATTCAAAGAAATTGATGCTCGGCCAGCAAAGAAGGTTGCAGAGGCAAAAGCCCGTAAGAAACGGGTTGCAATGAAGAAGTTGGAGGGAGTTCGAAACAAAGCAAATGCAATATCTAATCAAACTGACATCTCCAATCAATCGAAAAATAAAATGATTGAGCGACTATACAAGAAGGCTACGCCTAAGAGACCCAAGAAGGAGTATGTGGTTGCCAAGAAGGGAGTACAAGTTAAAGGTGGTAAAGGAAAAGTAATAGTTGACCGTCGATTGAAAAAAGACTCGCGATCTAGAGGAATTGGTAGGCATGGTAAAAACATTTCCAAACAGGGGAAGACTAGAAAGAATCCTTCAAAAACTGGAACTTCTGGAGGTAAAAGACATGCGAAAGCAGGTCCTGGTGGAGGCAAATCGGGAAAAAGGATGTGATTGTATATGATAAGAAAAAATCAACGAGTTACAGATATTTCATGTCTTGATTGACTTTGTTTGAGTGAGGTGATTTTTCATTATAATATTAGCTCCTAAATTTTCTGGGTGTTGCAGCTGGGGGCCTATTTCTTACTCATTTCATCGTGCCTGAATATTACCTTCATTCCTAAGCAAGTTTAAACACTATTATCGCTGCCATATTATATGCTTGCATTTGCAGCTCACCATACACCTACGATGCTTTTTGCATCTTTAGTGAGTTGAAATTTTGACGAGAAGAGCGTCTCTCAATTGGTCACGAGTGTAGCTCTTACAGATTAACCTATTAGTTTCAAATCAATGGTTTTAATATAGTTAAACTTCAATTTTAGTT

Ace file of the UniGene sp_v1.1_unigene20960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FtsJ-like methyltransferase family protein n=1 Tax=Musa acuminata RepID=Q1EPL1_MUSAC	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	at4g25730 f14m19_10	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal RNA methyltransferase RrmJ/FtsJ	IPR002877	-	0.0	72%
Blast2go	Ribosomal RNA large subunit methyltransferase E	IPR015507	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRL8

Fln msg: your sequence is longer than subject: 398 - 344

Fln protein: MGKAKGKHRLDKFYHLAKEQGYRSRAAFKIVQLDAKFSFFSSARSLLDLCAAPGGWMQVAVKHMPVGSLIMGVDLVPIRPIRGAFSLQEDITTPKCKASIRKLMKENGCNMLDVVLHDGSPNVGGAWSKEATTQASLVVDALKLAVEFLAPKGTFVSKVFRSQDYNAILYCFKQLFEKVEVTKPVASRSTSAEIYVVGLRYKAPAKIDPRLLDVKHLFQQVVDPPKVVDVLRGSKQKRNRQGYEEGLATIRKIGLASDFVWSDKPLEVLGSVTSISFEDPACSSLKDHSLTTDEIKLLCDDLRVLGKQEFKLLLKWRLHIRKALSPQVKNDSGVDEVNETVEGDDDERMLSQMEELHSIYERKKKKTKKLLAKRRAKAKARTRTGMKVDVMEDRDND*

Protein Length: 399

Fln nts: ATGGGGGAAAGGGCTTTTGACTGGTTCAATTTTGAACCTGCATGTGACCATGATTTGACTTCCACAAGTAAGTTGTGTTTTTTAAACCTTTCATGGAAAACCCGATAAACCCTACCGAATACAACCATTTTCCCAAATATATTCACACCGTGCACACCCTGAATCCCTGGAATCCCTGGTTATAGGACCCTTTTACCACAAACCTGCAAATAGTACTCGTTTTCAGTGAACTCTAAGATCCTTGCGATATATTGCGTTATAACTTCTTCCGTCGACGAAGAGCGACTTATCCGCTTTCTTCCTCCGTATTCATAA_-_ATGGGAAAGGCCAAGGGAAAGCACCGGCTTGATAAATTTTATCACCTTGCAAAAGAGCAGGGTTACAGATCCAGAGCAGCTTTCAAAATAGTCCAATTAGATGCGAAGTTCAGTTTTTTCTCTTCGGCCAGGTCCCTTCTGGATCTGTGTGCGGCCCCTGGCGGGTGGATGCAAGTGGCGGTGAAGCATATGCCCGTTGGGAGTCTGATAATGGGCGTTGATTTGGTGCCCATTCGTCCTATTAGAGGGGCTTTCTCTCTACAGGAGGACATAACTACTCCCAAGTGCAAGGCTTCCATTCGGAAATTAATGAAGGAAAATGGATGTAATATGTTGGATGTTGTGCTGCATGATGGGTCTCCTAATGTGGGAGGTGCTTGGTCTAAGGAAGCCACTACGCAGGCTTCCCTGGTTGTAGATGCATTGAAGCTGGCTGTTGAATTCTTGGCACCCAAGGGAACTTTTGTCTCCAAGGTATTTCGATCGCAAGATTACAATGCAATACTTTATTGCTTCAAACAGTTGTTTGAAAAAGTAGAAGTGACAAAGCCAGTTGCCAGTCGATCGACATCTGCAGAAATATATGTTGTTGGTTTGAGATATAAAGCACCTGCTAAGATTGATCCACGCCTCCTTGATGTTAAACATCTTTTCCAACAAGTTGTTGATCCACCAAAGGTTGTGGATGTTCTCAGAGGATCTAAACAAAAGCGAAATCGTCAAGGATATGAAGAAGGACTTGCAACAATACGGAAGATAGGTCTTGCTTCAGATTTTGTTTGGTCAGATAAGCCTTTGGAAGTCCTCGGTTCAGTTACTTCAATTTCATTTGAGGATCCAGCATGTTCTTCCTTAAAGGATCATTCTCTCACTACTGATGAGATAAAATTACTGTGCGATGATTTGCGGGTTTTGGGGAAACAAGAATTCAAGCTTTTGTTGAAGTGGCGTTTGCACATCCGGAAGGCCTTATCTCCTCAAGTGAAAAATGATTCTGGGGTGGATGAAGTGAACGAAACAGTTGAGGGTGATGATGATGAGCGAATGTTGAGTCAAATGGAGGAATTGCATTCTATTTATGAACGAAAGAAGAAAAAAACAAAGAAACTCCTTGCAAAAAGACGGGCTAAGGCTAAAGCACGTACCCGAACAGGAATGAAAGTGGATGTCATGGAAGATCGCGACAATGACTAG___AATTAGTTTTCTTTATCTTCTATTAAGGCTAAGAAGGATCTATTGGTTGTGGATTCTCCAGCACAATCTGATGATCAGATTGATGTTGCAAGTGAAGATGAGGCTAATGGCCCAAAATCAGAAGACAGTGAAGCAAGTGATGTTGATTCTGATGAAGAGAGGAGGAGGTATGATGAAGAACTTGAAAACTGTCTGGATCGAGCTTATGAGCGGTTTGTTGCTGCAAAAGAAGGCAGTACAAAGAAGCGAAAACGTGCAAAATTAATTAATGATGCTACTGATAGCGAAGTCTGGAAGGACAATGGGACTTATCAGGATAATATTCATGAAGACTATTCAGATGAGAGTGCTGAGGATGGTGAGGCCAATCCATTGGTGGTGCCACTAACTGAGGAAGAACAACCATCTAAAGAGCAGCTGACTGAGCAGTGGTTCAGTCAGGATCTCTTCATGGGTTTTCAAGACACCTGCAATAAAGAAGACAGTGATTCTGACATGTCAGAAGGAGGTCAAGATATCAAATCATTCCCAAAATCATCTGGTGAAAGGAGAAGTGAGCCCAACAATAAATCCAACAAGAAGAATATTTCTATCACATCTGAGTCCAAGATTTTGCAAGACAACGGATCTGAGCCAGAGAGAGATGATGGCTTTGAAATAGTTCCTGCTGCATCTTCTGGCTCAAGTGATGAATCTTCTTCGGAAGATGAATCAGATTATGACACTGATTCCAAAGCAGAAATTTTAGCTTATGCGAAGAAAATGTTGAGGAAAAAGCAACGGGAAGAGATTCTAGATGCTGCCTACAATAGGTATACTTTTGATGATGAAGGTCTGCCGGAATGGTTTGTCAAGGAAGAAAAAATTCACTGCCAGCCTCAGAAACCCATAACAAGAGAGGAGATTGAAGCCATGAAAGCACAATTCAAAGAAATTGATGCTCGGCCAGCAAAGAAGGTTGCAGAGGCAAAAGCCCGTAAGAAACGGGTTGCAATGAAGAAGTTGGAGGGAGTTCGAAACAAAGCAAATGCAATATCTAATCAAACTGACATCTCCAATCAATCGAAAAATAAAATGATTGAGCGACTATACAAGAAGGCTACGCCTAAGAGACCCAAGAAGGAGTATGTGGTTGCCAAGAAGGGAGTACAAGTTAAAGGTGGTAAAGGAAAAGTAATAGTTGACCGTCGATTGAAAAAAGACTCGCGATCTAGAGGAATTGGTAGGCATGGTAAAAACATTTCCAAACAGGGGAAGACTAGAAAGAATCCTTCAAAAACTGGAACTTCTGGAGGTAAAAGACATGCGAAAGCAGGTCCTGGTGGAGGCAAATCGGGAAAAAGGATGTGATTGTATATGATAAGAAAAAATCAACGAGTTACAGATATTTCATGTCTTGATTGACTTTGTTTGAGTGAGGTGATTTTTCATTATAATATTAGCTCCTAAATTTTCTGGGTGTTGCAGCTGGGGGCCTATTTCTTACTCATTTCATCGTGCCTGAATATTACCTTCATTCCTAAGCAAGTTTAAACACTATTATCGCTGCCATATTATATGCTTGCATTTGCAGCTCACCATACACCTACGATGCTTTTTGCATCTTTAGTGAGTTGAAATTTTGACGAGAAGAGCGTCTCTCAATTGGTCACGAGTGTAGCTCTTACAGATTAACCTATTAGTTTCAAATCAATGGTTTTAATATAGTTAAACTTCAATTTTAGTT

Fln Alignment:

sp_v1.1_unigene20960___MGKAKGKHRLDKFYHLAKEQGYRSRAAFKIVQLDAKFSFFSSARSLLDLCAAPGGWMQVAVK--HMPVGS----------LIMGVDLVPIRPIRGAFSLQEDITTPKCKASIRKLMKENGCNMLDVVLHDGSPNVGGAWSKEATTQASLVVDALKLAVEFLAPKGTFVSKVFRSQDYNAILYC-FKQLFEKVEVTKPVASRSTSAEIYVVGLRYKAPAKIDPRLL
A9NRL8_______________MGKAS-KDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHF--DGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKD-TSLLYCQLKMFFSTVTFAKPKSSRNSSIEAFAVCENYNPPEGFDPNNL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
166		80	20		0.995493
167		80	20		0.995493
168			20	80	0.995493
188		80		20	0.995493
293			50	50	1.0
423	20		80		0.999996
675		11		88	0.923564
739		22		77	0.999999
756	75		25		1.0
1036		75	25		1.0
1037	75		25		1.0
1041	87		12		0.992554
1044		25		75	1.0
1095			25	50	1.0
1363			12	87	0.992554
1400		16	83		0.994512
1513		33		66	0.997452
2009			16	83	0.994512
2010		83	16		0.994512
2151		20	80		0.995493
2160			80	20	0.995493
2168	83			16	0.994512
2169	83		16		0.994512
2170			16	83	0.994512
2224		83		16	0.994512
2233	85		14		0.993533
2311		80		20	0.995493
2377	83			16	0.994512
2687		20		80	0.995493
2696	90		10		0.90298
2698		90		10	0.90298
2704		10		90	0.90298
2706		10	90		0.90298
2887		54		45	1.0
2897	85			14	0.999981
2898		14		85	0.999981

SSRs (tot: 1)

Start position	End position	Sequence	Length
1344	1355	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain