SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20956

Length: 3069 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20956
TTTCCAAAGGTGATAAGGCTTCTGACAAATAGGGCATCAATACTCAACTTTGTCCTCAAAGTTTTGGGATCAATTATGTATTGTAGGTCCACCATTGAAGTTTGGACTTTAGGTTTTTGAACAGCTGCAGGAACCTCCATGTAATTTTCAAGAAAAACATGTCCCATTGAACAGTGGTCTCAAAACCTGCTGGTCTTCAAATTCCCTGTACTCTTATAAATTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCAATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATCCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGACACGCAGACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCGCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTCAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCGGGCGATTATGTACCTCCTGAAAGGCCAGAAGAGGGAACCGATTACTGGAATGCCCAAAAGCACAGGAGAACCATGATCTATGTGCATGCCAAGCTCATGATAGTGGACGATGAATATGTTATCATAGGATCGGCCAATCTGAACCAGAGATCCATGGACGGAGCCAGGGACTCCGAAATAGCCCAAGGATGTTACCAGCCATACCACATCAACCAACGGGGCCAGAGAGCTCGAGGAGAGATATTTGGATATCGAATGTCTGTGTGGTATGAACATTTTGCACATAAAAATGGCGGCCTGCGTCGTGAATATCTTCATCCAGAGAGTGTGGAATGCGTGAGGCTCGTACGCAGGATATGCCAGCGAATTTGGGACTCTTTTGTTCAAGAAGAGACTGTGGAGGATCTGCCCGGGCATCTTATGCTATTTCCTATGGGGGTGCTGAAGGATGGGTCGTTGGATGAAGAGGATATTGTGTACCCTGATACCAAGGCTTCTGTGAAAGGCCGCAAGATTGATGTTCTGCCTCCAATACTCACAACCTGAGCACGTTGCCCTTCTAAGCTCCTTCCAGGGTTACCGGAGATGTTGATAATTGCAAGGTGTTATCATATGCGTGATAAACAATCTAATAAGCTTTTTTATTAGTATGATTAATAAATAGGTTTTGCGACTCAGTTAGAATTTTTTTAGAAGAAAAAAGCCCTTATTTTTATATATTATATATAAAGAAGAGTACAGGTTACATAGTTCTTTTTCAGATTAGTACAGGTTACATAGTTTTCTTTCAGATTAGTTCATGTTGTTCCAAGTAAATATATGTAAATAGTTTTCTTTCAGATTAGTTCATGTTGTCCCAAGTAAATATATGTAAATCTTGATTCATATCAAA

Ace file of the UniGene sp_v1.1_unigene20956

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase D (EC:2.7.7.38 3.1.4.4)	-	-	52%
FL-Next	sp=Phospholipase D alpha 1; Zea mays (Maize).	-	-	52%
Blast2go	phospholipase d	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	68%
Blast2go	Phospholipase D/Transphosphatidylase	IPR001736	-	68%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	68%
Blast2go	Phospholipase D, plant	IPR011402	-	68%
Blast2go	Phospholipase D	IPR015679	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q43270

Fln msg:

Fln protein: MASQVVHGTLTATIFEARHLSHGGLPRLLRKVGEEVKELLHQDKHSGLYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRHADRSLSAFQTVEIAAEFTHHQKTVCLDARVHGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQADPTLLLNLEDLPGLLPPGTNFEGPETWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWDRDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLPGDYVPPERPEEGTDYWNAQKHRRTMIYVHAKLMIVDDEYVIIGSANLNQRSMDGARDSEIAQGCYQPYHINQRGQRARGEIFGYRMSVWYEHFAHKNGGLRREYLHPESVECVRLVRRICQRIWDSFVQEETVEDLPGHLMLFPMGVLKDGSLDEEDIVYPDTKASVKGRKIDVLPPILTT*

Protein Length: 809

Fln nts: TTTCCAAAGGTGATAAGGCTTCTGACAAATAGGGCATCAATACTCAACTTTGTCCTCAAAGTTTTGGGATCAATTATGTATTGTAGGTCCACCATTGAAGTTTGGACTTTAGGTTTTTGAACAGCTGCAGGAACCTCCATGTAATTTTCAAGAAAAACATGTCCCATTGAACAGTGGTCTCAAAACCTGCTGGTCTTCAAATTCCCTGTACTCTTATAAATTTGTGTAGCTTGAAACATCTCCATAGTCAGTGCATTGCATTACTTTTGTGATTTACATATTTCTAATACAGGTCTCCA_-_ATGGCATCCCAAGTAGTTCATGGTACTCTTACTGCCACCATATTTGAAGCTAGGCACCTCAGTCATGGAGGCTTACCCAGGTTGCTGAGAAAGGTGGGGGAAGAAGTTAAGGAGCTTCTCCATCAAGATAAGCACAGTGGATTATATGCCACCATAGATATTGGTATTGCTAGAATTGCAAGAACCAGAGTTCTGTCCCGTGAACCTACAAACCCAATTTGGAACGAAACTTTTCACATACTCTGCGCCTACACATCGCCTTCTCTGGTTATCAGCGTTAAGAAGGGATTGGAAATCTCTGCACAAGTGGTTGGAAGAGCCAAGATCCCAATCTCAGAAATTCTCAGCGGCAAGGTCATCGAGGGCTGGTATGACTTATATAATGAAGACTTTTCCGAACAGCTGAAGAAATCTCAGATCCATGCCCGCCTCCAGTTCAAACAAGTCTCAGAAGATCCATATTGGGGTTCCGGGATTCGAGATCGAGACTTCCCAGGAGTCCAGCATGTGTATTTCAAGCAGAGGAAAGGATGCAGAGTCAATCTGTATCAGAATTCTCACTTATCAGAAAACTATCGTCCCAGGATCGAGCTAGGTCATGGTGAGGAGCGCGCCTTATACAGGCCTCCGAGACTGTGGGAGGAAGTGTACCAGTACATTGATGGAGCCGAGCAATTTATATACATTGCTGGATGGTCTGTAAATACCAAGATTACGCTTGTGAGGGACAAGGAAAGGATGATCCCTGGTGCAGAAACTGTGACATTGGGTGAACTTTTGAAGAAGAAAGCGGATCAGGGAGTAAGAGTTCTGGTCCTCATCTGGGAAGATAGAACGGCCGTGGAGCTTCTCAGAAACCAGGGACTCATGCAAACCCACTGTGACGAGACATTTGAATATTTCAAGGGCACCAATGTCTACTGCTTTCAATGTCCCAGACACGCAGACCGTTCGTTGAGTGCATTCCAAACCGTGGAGATTGCAGCAGAGTTTACCCATCACCAGAAGACTGTGTGCTTGGATGCGCGCGTCCATGGCTCTGAGAATCGCGAGGTCGTGAGCTTCGTTGGAGGAATTGATCTCTGCGATGGAAGGTATGATAACGAGATCCATCCATTGTTCAGGACTCTGGATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGGAACGGATCTTCGGCACGGAGGCCCTAGGGAGCCATGGCATGATGCCCATTCTAAGATCCAGGGCCCTGCTGCTTACGATGTGGTCACCAATTTTACTCAGCGCTGGACAAAACAGGCCGATCCCACACTTCTCCTAAATCTTGAGGATTTACCAGGCCTATTGCCGCCTGGAACAAATTTTGAAGGTCCGGAGACCTGGAATGTTCAGATCTTTAGGTCTATAGACGATGCTTCAGTGGTCGGATTCCCTGCAAATCCCTCCGAAGCGCCCGAGCTGGGTTTGATTACTGTAAAGGATCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGAGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATCAGGACTGCGAATGTCTGCATCTGATACCAATTGAGATTGCGCTAAAGGTAGTGAGCAAGATCAGAGCCCGGGAGCGGTTCTCCGTGTATGTGCTGACCCCAATGTGGCCGGAGGGAATACCGGAGGGCGATACTGTGCAGGCAATCCTGCACTGGTTCAGGAACACCGCGCGCATGATGTATAAGATGATCGGCGAAGCACTCAGGGAAGAGGGCCTGGACCATGAGTACCGCCCGACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCGGGCGATTATGTACCTCCTGAAAGGCCAGAAGAGGGAACCGATTACTGGAATGCCCAAAAGCACAGGAGAACCATGATCTATGTGCATGCCAAGCTCATGATAGTGGACGATGAATATGTTATCATAGGATCGGCCAATCTGAACCAGAGATCCATGGACGGAGCCAGGGACTCCGAAATAGCCCAAGGATGTTACCAGCCATACCACATCAACCAACGGGGCCAGAGAGCTCGAGGAGAGATATTTGGATATCGAATGTCTGTGTGGTATGAACATTTTGCACATAAAAATGGCGGCCTGCGTCGTGAATATCTTCATCCAGAGAGTGTGGAATGCGTGAGGCTCGTACGCAGGATATGCCAGCGAATTTGGGACTCTTTTGTTCAAGAAGAGACTGTGGAGGATCTGCCCGGGCATCTTATGCTATTTCCTATGGGGGTGCTGAAGGATGGGTCGTTGGATGAAGAGGATATTGTGTACCCTGATACCAAGGCTTCTGTGAAAGGCCGCAAGATTGATGTTCTGCCTCCAATACTCACAACCTGA___GCACGTTGCCCTTCTAAGCTCCTTCCAGGGTTACCGGAGATGTTGATAATTGCAAGGTGTTATCATATGCGTGATAAACAATCTAATAAGCTTTTTTATTAGTATGATTAATAAATAGGTTTTGCGACTCAGTTAGAATTTTTTTAGAAGAAAAAAGCCCTTATTTTTATATATTATATATAAAGAAGAGTACAGGTTACATAGTTCTTTTTCAGATTAGTACAGGTTACATAGTTTTCTTTCAGATTAGTTCATGTTGTTCCAAGTAAATATATGTAAATAGTTTTCTTTCAGATTAGTTCATGTTGTCCCAAGTAAATATATGTAAATCTTGATTCATATCAAA

Fln Alignment:

sp_v1.1_unigene20956___MASQVVHGTLTATIFEARHLSH-----GGLPRLLRKVGEEVKELLHQDKHSG-LYATIDIGIARIARTRVLSREPTNPIWNETFHILCAYTSPSLVISVKKGLEISAQVVGRAKIPISEILSGKVIEGWYDLYNEDFSEQLKKSQIHARLQFKQVSEDPYWGSGIRDRDFPGVQHVYFKQRKGCRVNLYQNSHLSENYRPRIELGHGEERALYRPPRLWEEVYQYIDGAEQFIYIAGWSVNTKITLVRDKERMIPGAETVTLGELLKKKADQGVRVLVLIWEDRTAVELLRNQGLMQTHCDETFEYFKGTNVYCFQCPRHADRSLSAFQTVEIAAEFTHHQKTVCLDARV--HGSENREVVSFVGGIDLCDGRYDNEIHPLFRTLDTVYRDDFHQNNYKGTDLRHGGPREPWHDAHSKIQGPAAYDVVTNFTQRWTKQAXXXXXXXXXXXXXXXXXXXNFEGPE---TWNVQIFRSIDDASVVGFPANPSEAPELGLITVKDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWD----RDQDCECLHLIPIEIALKVVSKIRARERFSVYVLTPMWPEGIPEGDTVQAILHWFRNTARMMYKMIGEALREEGLDHEYRPTDYLNFFCVGNREVKLPGDYVPPERPEEGTDYWNAQKHRRTMIYVHAKLMIVDDEYVIIGSANLNQRSMDGARDSEIAQGCYQPYHINQRGQRARGEIFGYRMSVWYEHFAHKNGGLRREYLHPESVECVRLVRRICQRIWDSFVQEETVEDLPGHLMLFPMGVLKDGSLDEEDIV--YPDTKASVKGRKIDVLPPILTT
Q43270_______________MAQILLHGTLHATIFEAESLSNPHRATGGAPKFIRKLVEGIEDTVGVGKGATKIYATVDLEKARVGRTRMISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAYLAVQDLLGGEEIDKWLEISDEN-REPVGDSKIHVKLQYFDVGKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLYQDAHVPDNFVPRIQLADGKN---YEPHRCWEDIFDAISKAQHLIYITGWSVYTEITLVRDTNRPKPGGD-VTLGELLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETANYFHGTDVNCVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPNQGSQQRRIVSFIGGIDLCDGRYDTQYHSLFRTLDTVHHDDFHQPNFEGGSIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWRKQGGKDLLVRLRDLPDIIIPPSPVMFPEDRETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSYGWKPEGIKPEEIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALEANGI--EANPKDYLTFFCLGNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATR-QPARGQIHGFRMSLWYEHL----GMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
172		66		33	0.997452
281		12		87	0.992554
282			12	87	0.992554
286	87		12		0.992554
289	87	12			0.992554
291	87			12	0.992554
292			87	12	0.992554
294			12	87	0.992554
297		87		12	0.992554
300	87	12			0.992554
303		12	87		0.992554
304	12	87			0.992554
605	87		12		0.992554
606			87	12	0.992554
608		12	87		0.992554
610		12		87	0.992554
611	12			87	0.992554
613			85	14	0.993533
614	85		14		0.993533
617	85			14	0.993533
619	14	85			0.993533
622	85		14		0.993533
624	83	16			0.994512
625		14		85	0.993533
626	71	28			1.0
1615			10	90	0.90298
1616			10	90	0.90298
1663		10	90		0.90298
1799		13		86	0.999973
1971			10	90	0.90298
2013			83	16	0.994512
2850		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain