SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20954

Length: 1589 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20954

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1624 multi-domain protein	-	-	1.0e-05	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1624	IPR012429	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX21

Fln msg: your sequence is longer than subject: 179 - 124

Fln protein: MQHLKENQQQQQSTKENSNITVIQDGQTPPAIPTNEAKTRVVTLDVFRGLTIAVMILVDDAGGEWPHITHAPWNGCNLADFVMPFFLFIVGVAIALAFKRITEIGPAIKKVVVRTLKLLFWGILLQGGYSHAPDDLSYGVNIEKNKMVWHSSADCVGLPGGVTSGDNNNKEETDKSTS*

Protein Length: 180

Fln nts: ACCTTTATTAAGTCATGCCTTGGAAGACATCAATATAATTACAAGATCATTATGTGTTAGTGTGGTTGCCTTCCTGTAAGTTGGATACAGAGGAAG_-_ATGCAGCATCTCAAGGAAAATCAACAGCAGCAGCAATCAACAAAGGAGAATAGCAACATTACCGTTATTCAGGATGGGCAGACTCCTCCTGCAATACCCACGAATGAAGCCAAGACCAGAGTTGTTACTTTGGACGTATTCCGAGGCCTCACCATTGCAGTTATGATTTTGGTGGATGATGCAGGAGGAGAATGGCCGCACATCACTCACGCACCTTGGAATGGGTGTAATCTAGCAGATTTTGTGATGCCTTTCTTTCTCTTCATTGTAGGAGTGGCAATAGCTCTCGCTTTCAAGAGAATCACTGAGATAGGGCCTGCAATTAAGAAGGTAGTTGTGAGAACTTTGAAGCTTCTCTTCTGGGGAATCCTTCTGCAAGGTGGTTATTCCCATGCACCAGATGACTTGTCTTACGGAGTTAATATAGAAAAAAATAAGATGGTGTGGCATTCTTCAGCGGATTGCGTTGGCTTACCTGGTGGTGTCACTAGTGGAGATAACAACAATAAAGAAGAGACCGACAAATCTACCTCCTGA___GCGTTTTGCCATATTCAAGTTATATATTTGGAATTGGCTTTTTGGGCTATGTGTGTTCCTCATTTACTTCGCAATAACATATGGGCTCTACGTTCCAGATTGGCATTTTGTTGTGCATGATGAAGACAGTCCTGACGTTGGAAAGTCATTTACAGTAAAATGTGGTGTAAGGGGTCACCTAGGGCCTCCTTGCAATGCCGTAGGCTATGTTGATAGACAAGTGTGGGGTATAAATCATTTGTACCGCTATCCTGAATGGACAAGGTCAAAGTACTGTACAGAGAGCTCTCCCGGAGAAGGGCCACTACGCAAGAATTCACCTGCATGGTGCTTAGCACCATTTGAACCTGAAGGCTTGTTGAGTTCAATCTCTGCGATCATGTCTACCATTATTGGAGTACACTATGGGCACATTCTCATCCATTTCAAGGACCATGCTCAGAGGCTGAAGCATTGGGTGACCATGGCTTTTGGATTCCTCATCCTTGGAATTATTTTACATTACACGGATGCAATTCCACTGAACAAACAACTGTACAGCTTCAGTTATGTTTGCCTCACAGCAGGAGCAGCAGGGCTTGTTTTCTCGGCCTTTTATCTTCTGATTGATATTTGGGGTTTAAGGAGGCCATTTTTGCTCCTTGAATGGATGGGAATGAACGCCATGCTTATTTTTGTCATGGCAGCCCAGGCTATATTCCCAGCATTTGTTAATGGATGGTATTACGAAACGCCCAACAATACCTTGGTACATTGGATTCAAAAGCACATATTTATTAAAGTGTGGCACTCAAGAAAAGTTGGCTTGCTGCTCTATGTGTTATTTGGAGAGATTCTATTTTGGGGTATTGTGGCAGGGATTTGTCATCAACTTGGTATATATTGGAAGTTGTAAATATTTATTTGGCATTTGTAAAATGACAAGGGATTTTTAATTAGAGATTGATAATCTATTG

Fln Alignment:

sp_v1.1_unigene20954___MQHLKENQQQQQSTKENSNITVIQDGQTPPAIPTNEAKTRVVTLDVFRGLTIAVMILVDDAGGEWPHITHAPWNGCNLADFVMPFFLFIVGVAIALAFKRITEI
A9NX21_______________MQHLNGNHQKQPSTTESSNVIVIQDGQTIPAKPTNETKTRVATLDVFRGLTIAVMILVDDAGGKWPQINHSPWNGCTLADFVMPFFLFIVGVAVALTFKVVQQL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
953	57		42		1.0
1019	88		11		0.923564
1020			11	88	0.923564
1042		90		10	0.90298
1044	90		10		0.90298
1045			10	90	0.90298
1103	88		11		0.923564
1168	80		20		0.999996
1170	85		14		0.999981
1171	85			14	0.999981
1175	14			85	0.999981
1176	85	14			0.999981
1185		15	84		0.999986
1187		15		84	0.999986
1248	90	10			0.90298
1254		10	90		0.90298
1255		10	90		0.90298
1256	10		90		0.90298
1258		10		90	0.90298
1259	10			90	0.90298
1267	33		66		1.0
1306	10		90		0.90298
1315			10	90	0.90298
1316			90	10	0.90298
1348			45	54	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain