SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20948

Length: 2298 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20948
CTTGGTGGGTTTTTCTTTCTTTCTTTCGACTTCGATACCTCCGCAGTGTGCCTGTGGGGAATCGGGATATTCAACCAAAGTTTTTGCCATGGCTTAAACCCTACAAAGCCCTTTGAACAAATCAAGCACTGAACTTTGGAATGCTGTAACAATGGCGAAACCTTTTCTCATGTTTACAACGCGAAAGATTATCGAGGCATCCTCGACGAAACTGCTGCGATCCGGGACGATTTCTGCTGCGAGGGCGGGGAATATCGGTTCGATATCTAATTTACAAGGTGCAGAATATTCGTCTGAACATTTCGATCATTCCTTTGCCGCTTCTGATACGCGAAATGGATACGAATCGTTTCAAAGCAGTCCTACATTGTTCCCCACAGCCCCGTGGAACCGCAATTATTCCACAAAGGTTGCCAATGAACCGAAAACTGAAAAAAAGACGGGCAATGGGGCTAAGGAAGCCAGAGAAAAGAGGGCGAAAGCTAAAGATAAAACCCTGGAGCTCTCAGACTCTGAAAAGATTTGCCTAATCCTAAATGGAGATGTAAATTTGGAAGATTTGGTGGAGAAATTAGAAGAAACTGGAATTGAAATGAATCCCATTTTGTTGAAACAAGTGATGGCGAAGGTTTCAAAGGACGCGGGGAGAAAGGTTTCAAGGTTCTATAAATGGTCAATAGAACAACCTGGATGCGATTCCAATTTAGAGATTTTCAATGCTGTAATAGACTTTTTGGGAAGAAGGAAAGATTTCAAGGCAGTGGAAACGTTGCTCAAAGAAAATGCGGCCTCTGGCAGCTGCGATGTTGGTGGAGAAATTGGTCTGAAGACCTTTGAGATTGTTGTGGAAAGGCTTGTCAAGGCAGGCAGAGAGAAGCAGGCTGTTGTTTTCTTCAATAAAATGGAGGAGTACGGGTTTAAGCAGAATGAGGAGGCTCAGAAGATCGTCGTCCAATGGCTTTGCGAGAGAGGGTTTGCAAGTTATGCAGAGAATTTAGTGAAAAGTTTGGCAGATACATATTATCCCGATGAAGAGATCTGTAATACACTCGTCAAAGGGTGGTGCGTTGCGGGGAAATTGAATGAAGCCAAGAGAATGGTGAATGAAATGTCAGTTGGACAAATTGCCATGGGGGTGACGGCTTACAATGCTTTGCTCGATTGCATTTGCAAGTTGTGCAGAGAGAAGGACCCGTTTCGGCTCTTGCCTGAAGCCAATAAGATACTTGTTGAAATGGAGGCAGCAGGTGTGCCTCGTAACGAATCGACCTTTAATATTCTTATTACCCATTTATGCAAAATCCGTAAAACCGAGGATGCTTACCAGTTCTTCTTGAAAATGGAACAATATGGGTGCTCACCAAACTTGACCACTTATGTTGTTCTCATCAGGAGTCTGTTCCAGGCAGCTAGAGTGGCTGACGGCCATGAAATGCTGGATCAGATGAAGAAAGCTGGCTTTGAGGCAAATGTAAAAGCTTATTTTAGCTTTATCAAAGTTCTATGTGGAATTCAACGAGTCGAGCATGCTCATAAGGTCTTCAGTACAATGATAAGACATGGTTGCCGTCCTGGGCAAGAGACTTTTGAGCTGCTCGTCCCCAAGCTTTGTGAAATTGGGCATACTGGCAAAGCTAAGCGACTGTTTCGTAAAGCTGTCGCAGAAAGATGGATGCCTAGCAGTAGACAAGATATATTAGAGCAAAGCAAAGTTAAACAGCCTGCGGATGTTAAAAAGGAGAAGCCCAAAAGATTGACACTATCAATGATAAAAAAAGAAGAAGAATCTGAGACTGAAGAGGCTCAGGTTGAGTTTTGTTAAGAAGCCAAAGAGTTCCAGGAGACAATCTTATTGATGGAACTGGTACAGTTAACTTCTTCCAACCGTTTCTATCCAAGTAAAGATGCATTGGAGATTGAGCTACTGGACGCATTTTGTAGTTCACTTGTTGGGATTTAGTACTGCAAGTTTGTATCAAATGCACATTTACTAGTAGGTTTGCATTTTGCAGCAGTCATTTGTTCTGTTGCTGTTATTACCAAGTCCTACTAGTTTGTTTTTTGTTTATTAAATCAAAATCTTAATTTTCAAAACATATAGAATAACACGCAGGCTGTTGTTTGATTTAGATTAAAAAAGTTTTAGTATATGGAGTGTTGTTCAAATTCCACACTCCTTAAAACGTCATCTGCAATTTATTGTTATCAATAGTATGAATTCTAGATTTGTTTTACTGTTGTAAAGCCATGAATTTTCAGAGTAAAGCCATGAATTTATATTATTTTTCAAGAGGATAC

Ace file of the UniGene sp_v1.1_unigene20948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	47%
FL-Next	sp=Pentatricopeptide repeat-containing protein At5g60960, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	41%
Blast2go	pentatricopeptide repeat-containing protein	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FME4

Fln msg: your sequence is longer than subject: 557 - 521

Fln protein: MAKPFLMFTTRKIIEASSTKLLRSGTISAARAGNIGSISNLQGAEYSSEHFDHSFAASDTRNGYESFQSSPTLFPTAPWNRNYSTKVANEPKTEKKTGNGAKEAREKRAKAKDKTLELSDSEKICLILNGDVNLEDLVEKLEETGIEMNPILLKQVMAKVSKDAGRKVSRFYKWSIEQPGCDSNLEIFNAVIDFLGRRKDFKAVETLLKENAASGSCDVGGEIGLKTFEIVVERLVKAGREKQAVVFFNKMEEYGFKQNEEAQKIVVQWLCERGFASYAENLVKSLADTYYPDEEICNTLVKGWCVAGKLNEAKRMVNEMSVGQIAMGVTAYNALLDCICKLCREKDPFRLLPEANKILVEMEAAGVPRNESTFNILITHLCKIRKTEDAYQFFLKMEQYGCSPNLTTYVVLIRSLFQAARVADGHEMLDQMKKAGFEANVKAYFSFIKVLCGIQRVEHAHKVFSTMIRHGCRPGQETFELLVPKLCEIGHTGKAKRLFRKAVAERWMPSSRQDILEQSKVKQPADVKKEKPKRLTLSMIKKEEESETEEAQVEFC*

Protein Length: 558

Fln nts: CTTGGTGGGTTTTTCTTTCTTTCTTTCGACTTCGATACCTCCGCAGTGTGCCTGTGGGGAATCGGGATATTCAACCAAAGTTTTTGCCATGGCTTAAACCCTACAAAGCCCTTTGAACAAATCAAGCACTGAACTTTGGAATGCTGTAACA_-_ATGGCGAAACCTTTTCTCATGTTTACAACGCGAAAGATTATCGAGGCATCCTCGACGAAACTGCTGCGATCCGGGACGATTTCTGCTGCGAGGGCGGGGAATATCGGTTCGATATCTAATTTACAAGGTGCAGAATATTCGTCTGAACATTTCGATCATTCCTTTGCCGCTTCTGATACGCGAAATGGATACGAATCGTTTCAAAGCAGTCCTACATTGTTCCCCACAGCCCCGTGGAACCGCAATTATTCCACAAAGGTTGCCAATGAACCGAAAACTGAAAAAAAGACGGGCAATGGGGCTAAGGAAGCCAGAGAAAAGAGGGCGAAAGCTAAAGATAAAACCCTGGAGCTCTCAGACTCTGAAAAGATTTGCCTAATCCTAAATGGAGATGTAAATTTGGAAGATTTGGTGGAGAAATTAGAAGAAACTGGAATTGAAATGAATCCCATTTTGTTGAAACAAGTGATGGCGAAGGTTTCAAAGGACGCGGGGAGAAAGGTTTCAAGGTTCTATAAATGGTCAATAGAACAACCTGGATGCGATTCCAATTTAGAGATTTTCAATGCTGTAATAGACTTTTTGGGAAGAAGGAAAGATTTCAAGGCAGTGGAAACGTTGCTCAAAGAAAATGCGGCCTCTGGCAGCTGCGATGTTGGTGGAGAAATTGGTCTGAAGACCTTTGAGATTGTTGTGGAAAGGCTTGTCAAGGCAGGCAGAGAGAAGCAGGCTGTTGTTTTCTTCAATAAAATGGAGGAGTACGGGTTTAAGCAGAATGAGGAGGCTCAGAAGATCGTCGTCCAATGGCTTTGCGAGAGAGGGTTTGCAAGTTATGCAGAGAATTTAGTGAAAAGTTTGGCAGATACATATTATCCCGATGAAGAGATCTGTAATACACTCGTCAAAGGGTGGTGCGTTGCGGGGAAATTGAATGAAGCCAAGAGAATGGTGAATGAAATGTCAGTTGGACAAATTGCCATGGGGGTGACGGCTTACAATGCTTTGCTCGATTGCATTTGCAAGTTGTGCAGAGAGAAGGACCCGTTTCGGCTCTTGCCTGAAGCCAATAAGATACTTGTTGAAATGGAGGCAGCAGGTGTGCCTCGTAACGAATCGACCTTTAATATTCTTATTACCCATTTATGCAAAATCCGTAAAACCGAGGATGCTTACCAGTTCTTCTTGAAAATGGAACAATATGGGTGCTCACCAAACTTGACCACTTATGTTGTTCTCATCAGGAGTCTGTTCCAGGCAGCTAGAGTGGCTGACGGCCATGAAATGCTGGATCAGATGAAGAAAGCTGGCTTTGAGGCAAATGTAAAAGCTTATTTTAGCTTTATCAAAGTTCTATGTGGAATTCAACGAGTCGAGCATGCTCATAAGGTCTTCAGTACAATGATAAGACATGGTTGCCGTCCTGGGCAAGAGACTTTTGAGCTGCTCGTCCCCAAGCTTTGTGAAATTGGGCATACTGGCAAAGCTAAGCGACTGTTTCGTAAAGCTGTCGCAGAAAGATGGATGCCTAGCAGTAGACAAGATATATTAGAGCAAAGCAAAGTTAAACAGCCTGCGGATGTTAAAAAGGAGAAGCCCAAAAGATTGACACTATCAATGATAAAAAAAGAAGAAGAATCTGAGACTGAAGAGGCTCAGGTTGAGTTTTGTTAA___GAAGCCAAAGAGTTCCAGGAGACAATCTTATTGATGGAACTGGTACAGTTAACTTCTTCCAACCGTTTCTATCCAAGTAAAGATGCATTGGAGATTGAGCTACTGGACGCATTTTGTAGTTCACTTGTTGGGATTTAGTACTGCAAGTTTGTATCAAATGCACATTTACTAGTAGGTTTGCATTTTGCAGCAGTCATTTGTTCTGTTGCTGTTATTACCAAGTCCTACTAGTTTGTTTTTTGTTTATTAAATCAAAATCTTAATTTTCAAAACATATAGAATAACACGCAGGCTGTTGTTTGATTTAGATTAAAAAAGTTTTAGTATATGGAGTGTTGTTCAAATTCCACACTCCTTAAAACGTCATCTGCAATTTATTGTTATCAATAGTATGAATTCTAGATTTGTTTTACTGTTGTAAAGCCATGAATTTTCAGAGTAAAGCCATGAATTTATATTATTTTTCAAGAGGATAC

Fln Alignment:

sp_v1.1_unigene20948___ELSDSEKICLIL------NGDVNLEDLVEK--LEETGIEMNPILLKQVMAKVSKDAGRKVSRFYKWSIEQPGCDSNLEIFNAVIDFLGRRKDFKAVETLLKENAASGSCDVGGEIGLKTFEIVVERLVKAGREKQAVVFFNKME-EYGFKQNEEAQKIVVQWLCERGFASYAENLVKSLADTYYPDEEICNTLVKGWCVAGKLNEAKRMVNEMSVGQIAMGVTAYNALLDCICKLCREKDPFRLLPEANKILVEMEAAGVPRNESTFNILITHLCKIRKTEDAYQFFLKMEQYGCSPNLTTYVVLIRSLFQAARVADGHEMLDQMKKAGFE--ANVKAYFSFIKVLCGIQRVEHAHKVFSTMIRHGCRPGQETFELLVPKLCEIGHTGKAKRLFRKA-------------VAERWMPSSRQDILEQSKVKQPADV------KKEKPKRLTLSMIKK
Q9FME4_______________ESLDSNEIALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTL-NLSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEIISKYK--------GIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKKKTKEV--DSNVKKRETLPEKTARKKKRLKQINMSFVKK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1752	80		20		0.995493
1753	80		20		0.995493
1754	80		20		0.995493
1787		14	85		0.993533
1789	85			14	0.993533
1790			14	85	0.993533
1791		85	14		0.993533
1792			14	85	0.993533
1885	10	90			0.90298
2059		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
12	27	TTTC TTTC TTTC TTTC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain