SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20947

Length: 1303 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20947

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	100%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATATTTTCTCTGGCTTTTGCGAATTCTGATAAGTTCAGCTATTTTTCTGAAACAGGTCTTCAGTAGTGTTGTTACGCTTTCAAG_-_ATGCAGATCTTTGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCTGACACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACACTGGCAGACTACAATATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACTTTGGAAGTTGAGAGCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTTGCCGATTACAACATCCAGAAAGAATCCACCTTGCACCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTTGTCAAAACCCTAACTGGTAAGACGATTACTTTGGAAGTTGAGAGCTCGGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTAGGACCTTGGCTGACTACAACATTCAAAAGGAGTCAACCCTGCATCTGGTGCTTCGTCTAAGAGGAGGGATGCAGATCTTTGTAAAAACCCTTACAGGTAAAACAATTACTCTGGAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGCACTCTGGCCGATTATAATATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCTTTTAG___GTGGATGGGCTCTTATGTGTCAGTGATGGTCTGGTGATGTTCAGTTGTCGTCCTGCTTGTCGTGGACAAGTACTGTTTATGTTTCTATGTCTTATGTACTGTTTATGTTTCTATGTCTAATGTGCTGTTATTATTTCCACTTTGTTTGTTGGTCAGTCGAAGCACTACCTGGTCGGTAGTGCTATGCTATTTCCTTTAATATAAGGACTATGTTATCTGTTGTGTGAATCAATCTGCTATTATGTGTTAAGTAAATGTAGCTGAAAATGTTGTGCTA

Fln Alignment:

sp_v1.1_unigene20947___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Q3E7T8_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
607	83		16		0.994512
724		8	91		1.0
727	89	8	2		1.0
1052	21		78		1.0
1149		10		90	0.90298
1167	50			50	1.0
1275		16	83		0.994512
1282	60		40		1.0
1286	20		80		0.995493
1294	50			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain