SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20938

Length: 539 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene20938
ATGGGGATTGGACTTGATCCTCCTCCTTCCCCTGCATTTGGATTTTAGATTATAGTGCCGAACTCTCTGTGTGTGCGTTGAATTCAGAATCAATGGAGGAGCCCAAGCCCATTCCTGTGCCGTATTGTTCGTTCAACGAATCCGACACGACCTATAATTTCAACGGACCCCAAGTGAAGCCCAAGGGATTGATTTGCCTGCGCAGCGATCCAGAGCTGAAACGGAAGAGAAGGGTGGCTGCTTACAAAGCGTTGGCAGTTGAAGGCAAACTGAAATCATCCATGAAGAATGGCTTCAGATGGCTCAAGACTAAGTATGTCATAATGCGCTCTGGATGGGGTTCTGGTTGAATGAATCGCTTCTCAACCATAATTATGGATCGTTGTTGCTGTAACAAATTACTAGAAGACAATGATAAGTTTGAGGAATGAAGCATTTAAACTGTCATGTGAGATTGTTTTTCTTCCATATCTTACAACTTAGAATGATTTCTGTATATTTATGGTGGTATATTCTTTCTTTCTTTTACTTGGAGTATG

Ace file of the UniGene sp_v1.1_unigene20938

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3511 domain containing protein	-	-	4.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	unknown [Glycine max]	-	-	1.61682e-13	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPX3

Fln msg: your sequence is shorter than subject: 86 - 105

Fln protein: MEEPKPIPVPYCSFNESDTTYNFNGPQVKPKGLICLRSDPELKRKRRVAAYKALAVEGKLKSSMKNGFRWLKTKYVIMRSGWGSG*

Protein Length: 87

Fln nts: ATGGGGATTGGACTTGATCCTCCTCCTTCCCCTGCATTTGGATTTTAGATTATAGTGCCGAACTCTCTGTGTGTGCGTTGAATTCAGAATCA_-_ATGGAGGAGCCCAAGCCCATTCCTGTGCCGTATTGTTCGTTCAACGAATCCGACACGACCTATAATTTCAACGGACCCCAAGTGAAGCCCAAGGGATTGATTTGCCTGCGCAGCGATCCAGAGCTGAAACGGAAGAGAAGGGTGGCTGCTTACAAAGCGTTGGCAGTTGAAGGCAAACTGAAATCATCCATGAAGAATGGCTTCAGATGGCTCAAGACTAAGTATGTCATAATGCGCTCTGGATGGGGTTCTGGTTGA___ATGAATCGCTTCTCAACCATAATTATGGATCGTTGTTGCTGTAACAAATTACTAGAAGACAATGATAAGTTTGAGGAATGAAGCATTTAAACTGTCATGTGAGATTGTTTTTCTTCCATATCTTACAACTTAGAATGATTTCTGTATATTTATGGTGGTATATTCTTTCTTTCTTTTACTTGGAGTATG

Fln Alignment:

sp_v1.1_unigene20938___YNFNGPQVKPKGLICLRSDPELKRKRRVAAYKALAVEGKLKSSMKNGFRWLKTKYVIMRSGW
A9NPX3_______________YNFNGPKVKANAF-GVQNDADMKRKKRVASYKVLAVEGKMKNSVRSSFKWLKTKYTEIRYGW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
341		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
513	526	TTCT TTCT TTCT TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain