SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20935

Length: 464 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene20935
CGTCGTGACCTTGGCTGTCACTCAGGGGAGAGCTTGTCTGTCTTCCTAAAGGTGCAGCTTTACCGATTACTCTCAAAGCACGGGAGTATGAAGTTTTCACAGTTGTTCCTCTAAAGGGGTTAGCCAACGGCATCTCTTTTGCTCCCATTGGACTGATCAAAATGTTCAACTCCGGAGGAGCTATTAGTGCATATGAGTTCGATCCAAACACCTCAACAGTCTATTTGAAGATTCGAGGTTGCGGGGATTTTGAAGCATATTGTTCTGTGAGGCCACAAGCCATCTATGTGGATTCTACCCAGACAGAATTCAATTATGAAAAGGAATGTGATCTACCCACTTTCACATTGAAAGTGCCAAAAACAGAATTATATTTATGTGACATCAGAATTGACATATAAATGTTTAAACAAGTTAGATTTAGGTGTTGCATAGTTCCCTGCTCAACGGGCATCCTGAAAATG

Ace file of the UniGene sp_v1.1_unigene20935

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Truncated raffinose synthase-like protein (Fragment) n=2 Tax=Picea sitchensis RepID=E0ZFS7_PICSI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	truncated raffinose synthase-like protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 133 - 338

Fln protein: S*PWLSLRGELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKIRGCGDFEAYCSVRPQAIYVDSTQTEFNYEKECDLPTFTLKVPKTELYLCDIRIDI*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGAGAGCTTGTCTGTCTTCCTAAAGGTGCAGCTTTACCGATTACTCTCAAAGCACGGGAGTATGAAGTTTTCACAGTTGTTCCTCTAAAGGGGTTAGCCAACGGCATCTCTTTTGCTCCCATTGGACTGATCAAAATGTTCAACTCCGGAGGAGCTATTAGTGCATATGAGTTCGATCCAAACACCTCAACAGTCTATTTGAAGATTCGAGGTTGCGGGGATTTTGAAGCATATTGTTCTGTGAGGCCACAAGCCATCTATGTGGATTCTACCCAGACAGAATTCAATTATGAAAAGGAATGTGATCTACCCACTTTCACATTGAAAGTGCCAAAAACAGAATTATATTTATGTGACATCAGAATTGACATATAA___ATGTTTAAACAAGTTAGATTTAGGTGTTGCATAGTTCCCTGCTCAACGGGCATCCTGAAAATG

Fln Alignment:

sp_v1.1_unigene20935___GELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKIRGCGDFEAYCSVRPQAIYVDSTQTEFNYEKECDLPTFTLKVPKTELYLCDIRIDI
D5AEI9_______________GELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAISAYWFYQNTSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain